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Applied Mechanics and Materials
Vol. 472, 2014, Pages: 466-469

Bioinfo-Kit: A Sharing Software Tool for Bioinformatics

Yu Huang, Jian Yong Wang, Xiao Mei Wei, Bin Hu

Department of Molecular & Cell Biochemistry/ Markey Cancer Center/ Resource Center for Stable Isotope Resolved Metabolomics, University of Kentucky, Lexington, KY 40536, USA.


In bioinformatics research, for the lacks of an effective algorithm-integrating mechanism and a friendly graphical user interface of the toolkits in the field of biological data processing and analyzing, the authors designed and implemented a sharing software system Bioinfo-Kit based on the Java 2 Platform Enterprise Edition (J2EE), which provides 1) a general application development interface to integrate or bridge other programs and 2) a workflow mechanism to operate them and make them talk easily. In addition, a module for biological data (multiple electrodes data, biomedical data and etc.) analysis was implemented in the software system, which provided a workflow mechanism to integrate a series of algorithms and visualization tools. Because the interface developed is very general and flexible, new analysis tools can be integrated effectively as required. Bioinfo-Kit implies an ideal environment for integrative bioinformatics research.


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