Bioinformatics is the management, ie. storing, retrieving, organizing and analyzing, of biological information, using advanced computer technology be developing suitable software tools.
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1)Title: Exploring the microbial community inhabiting the phosphogypsum stacks of Huelva (SW SPAIN) by a high throughput 16S/18S rDNA sequencing approach
Author: Patricia Gómez-Villegas, José Luis Guerrero, Miguel Pérez-Rodriguez
Journal: Aquatic Toxicology
Year: 2022
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2)Title: The effects of climate on soil microbial diversity shift after intensive agriculture in arid and semiarid regions
Author: Jie Liua, Changkun Wang, Zhiying Guo
Journal: Science of The Total Environment
Year: 2022
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3)Title: Conceptual strategies for characterizing interactions in microbial communities
Author: Sho M. Kodera, Promi Das, Gilbert, Jack A
Journal: iScience
Year: 2022
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4)Title: Emerging frontiers in microbe-mediated pesticide remediation: Unveiling role of omics and In silico approaches in engineered environment☆
Author: Muneer Ahmad Malla, Anamika Dubey, Aman Raj
Journal: Environmental Pollution
Year: 2022
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5)Title: Hydrocarbon biodegradation potential of microbial communities from high Arctic beaches in Canada's Northwest Passage
Author: Madison Ellis, Ianina Altshuler, Lars Schreiber
Journal: Marine Pollution Bulletin
Year: 2022
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6)Title: Bacterial dynamics and functions driven by a novel microbial agent to promote kitchen waste composting and reduce environmental burden
Author: Can Wang, Minghui Wu, Chuanhai Peng
Journal: Journal of Cleaner Production
Year: 2022
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7)Title: When microclimates meet soil microbes: Temperature controls soil microbial diversity along an elevational gradient in subtropical forests
Author: Luwen Ma, Lan Liu, Yaoshun Lu
Journal: Soil Biology and Biochemistry
Year: 2022
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8)Title: Nanosensors for microbial detection in soil
Author: Rabisa Zia, Maryam Iftikhar, Amna Rafiq
Journal: Nanosensors for Smart Agriculture
Year: 2022
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9)Title:Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
Author: Doina Ciobanu, Sandy Chan, Steven Ahrendt
Journal: STAR Protocols
Year: 2022
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10)Title: Can polymer-degrading microorganisms solve the bottleneck of plastics’ environmental challenges?
Author: Nasser Delangiz, Sajad Aliyar, Neda Pashapoor
Journal: Chemosphere
Year: 2022
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11)Title: Biodegradation of plastics for sustainable environment
Author: Jyoti Singh Jadaun, Shilpi Bansal, Ankit Sonthalia
Journal: Bioresource Technology
Year: 2022
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12)Title: Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment
Author: Songzhe Fu, Qingyao Wang, Rui Wang
Journal: Science of The Total Environment
Year: 2022
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13)Title: Extremophilic electroactive microorganisms: Promising biocatalysts for bioprocessing applications
Author: Srishti Chaudhary, Sukrampal Yadav, Ramandeep Singh
Journal: Bioresource Technology
Year: 2022
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14)Title: Microbial fermentation via genetically engineered microorganisms for production of bioenergy and biochemicals
Author: Kang Zhou, Jie Fu J. Zhou
Journal: Biomass, Biofuels, Biochemicals
Year: 2022
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15)Title: Evolution of prokaryotic colonisation of greenhouse plastics discarded into the environment
Author: Sergio Martínez-Campos, Panayiota Pissaridou
Journal: Ecotoxicology and Environmental Safety
Year: 2022
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16)Title: Probiotics, Microbiome and the Concept of Cross-Feeding
Author: Alexis Torres-Miranda, Marco Vega-Sagardía, Daniel Garrido
Journal: Comprehensive Gut Microbiota
Year: 2022
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17)Title: Assessment of spike-AMP and qPCR-AMP in soil microbiota quantitative research
Author: Meiling Zhang, Liyu Zhang, Shuyu Huang
Journal: Soil Biology and Biochemistry
Year: 2022
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18)Title: Metagenomics insights into the profiles of antibiotic resistome in combined sewage overflows from reads to metagenome assembly genomes
Author: Junya Zhang, Dawei Yu, Liu Dian
Journal: Journal of Hazardous Materials
Year: 2022
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19)Title: Using integrated meta-omics to appreciate the role of the gut microbiota in epilepsy
Author: Lucia Boeri, Francesca Donnaloja, Marzia Campanile
Journal: Neurobiology of Disease
Year: 2022
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20)Title: The impact of heterotrophic bacteria on recalcitrant dissolved organic carbon formation in a typical karstic river
Author: Qiufang He, Qiong Xiao, Jiaxing Fan
Journal: Science of The Total Environment
Year: 2022
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21)Title: Cadmium stress efficiently enhanced meropenem degradation by the meropenem- and cadmium-resistant strain Pseudomonas putida R51
Author: Chuanqing Zhong, Yingping Zhou, Jiafang Fu
Journal: Journal of Hazardous Materials
Year: 2022
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22)Title: Utilizing the underutilized plant resources for development of life style foods: Putting nutrigenomics to use
Author: Rakeeb Ahmad Mir, Muslima Nazir, Sabreena
Journal: Plant Physiology and Biochemistry
Year: 2022
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23)Title: Whole-genome analysis of carbapenem-resistant Acinetobacter baumannii from clinical isolates in Southern Thailand
Author: Arnon Chukamnerd, Kamonnut Singkhamanan, Virasakdi Chongsuvivatwong
Journal: Computational and Structural Biotechnology Journal
Year: 2022
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24)Title: Impact of hexachlorocyclohexane addition on the composition and potential functions of the bacterial community in red and purple paddy soil☆
Author: Jian Wang, Kaidi Tang, Xiaojie Hu
Journal: Environmental Pollution
Year: 2022
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25)Title: Integrated microbiology and metabolomics analysis reveal responses of soil microorganisms and metabolic functions to phosphorus fertilizer on semiarid farm
Author: Hongyan Cheng, Minshu Yuan, Liang Tang
Journal: Science of The Total Environment
Year: 2022
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26)Title: In-situ biogas upgrading assisted by bioaugmentation with hydrogenotrophic methanogens during mesophilic and thermophilic co-digestion
Author: Matteo Palù, Maria Peprah, Panagiotis Tsapekos
Journal: Bioresource Technology
Year: 2022
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27)Title: Metagenomics revealed the mobility and hosts of antibiotic resistance genes in typical pesticide wastewater treatment plants
Author: Liming Shi, Zhang, Junya, Tiedong Lu
Journal: Science of The Total Environment
Year: 2022
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28)Title: Biochar mitigation of soil acidification and carbon sequestration is influenced by materials and temperature
Author: Na Geng, Xirui Kang, Xiaoxiao Yan, Na Yin, Hui Wang, Hong Pan, Quangang Yang, Yanhong Lou, Yuping Zhuge
Journal: Ecotoxicology and Environmental Safety
Year: 2022
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29)Title: Biogeochemical transformation of sulfur and its effects on arsenic mobility in paddy fields polluted by acid mine drainage
Author: Shuang Chen, Chipeng Zhang, Lijuan Qiu
Journal: Chemosphere
Year: 2022
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30)Title: Sustainable biorefineries for circular bioeconomy
Author: Aysegul Inam, Tugce Mutaf, Irem Deniz
Journal: Biomass, Biofuels, Biochemicals Circular Bioeconomy: Technologies for Biofuels and Biochemicals
Year: 2022
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31)Title: Future directions for the discovery of natural product-derived immunomodulating drugs: an IUPHAR positional review
Author: Cherry L. Wainwright, Mauro M. Teixeira, David L. Adelson
Journal: Pharmacological Research
Year: 2022
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32)Title: Effects of combined 4-chlorophenol and Cu2+ on functional genes for nitrogen and phosphorus removal and heavy metal resistance genes in sequencing batch bioreactors
Author: Yahe Li, Jianguo Zhao, Yu Li
Journal: Bioresource Technology
Year: 2022
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33)Title: Protocol for bioelectrochemical enrichment, cultivation, and characterization of extreme electroactive microorganisms
Author: Ramandeep Singh, Srishti Chaudhary, Sukrampal Yadav
Journal: STAR Protocols
Year: 2022
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34)Title: Specialized digestive adaptations within the hindgut of a colobine monkey
Author: Rui Liu, Katherine Amato, Rong Hou
Journal: The Innovation
Year: 2022
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35)Title: The application of the skin virome for human identification
Author: Ema H. Graham, Jennifer L. Clarke, Samodha C. Fernando
Journal: Forensic Science International: Genetics
Year: 2022
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36)Title: Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions
Author: Jun Feng, Yili Qian, Zhichao Zhou
Journal: Cell Host & Microbe
Year: 2022
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37)Title: Using metagenomic data to boost protein structure prediction and discovery
Author: Qingzhen Hou, Fabrizio Pucci, Fengming Pan
Journal: Computational and Structural Biotechnology Journal
Year: 2022
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38)Title: Comparison of bacterial and fungal diversity and network connectivity in karst and non-karst forests in southwest China
Author: Dan Xiao, Xunyang He, Guihong Wang
Journal: Applied Soil Ecology
Year: 2022
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39)Title: Network analysis reveals bacterial and fungal keystone taxa involved in straw and soil organic matter mineralization
Author: Dan Xiao, Xunyang He, Guihong Wang
Journal: Applied Soil Ecology
Year: 2022
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40)Title: Efficient Microcystis removal and sulfonamide-resistance gene propagation mitigation by constructed wetlands and functional genes analysis
Author: Bo Wang, Qin Peng, Rui Wang
Journal: Chemosphere
Year: 2022
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41)Title: Computing within bacteria: Programming of bacterial behavior by means of a plasmid encoding a perceptron neural network
Author: A. Gargantilla Becerra, M. Gutiérrez, R. Lahoz-Beltra
Journal:Biosystems
Year: 2022
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42)Title: Gestational Insulin Resistance Is Mediated by the Gut Microbiome–Indoleamine 2,3-Dioxygenase Axis
Author: Medha Priyadarshini, Guadalupe Navarro, Derek J. Reiman
Journal: Gastroenterology
Year: 2022
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43)Title: Oxygen gradients shape the unique structure of picoeukaryotic communities in the Bay of Bengal
Author: Zhuo Chen, Ting Gu, Xingzhou Wang
Journal: Science of The Total Environment
Year: 2022
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44)Title: Environmental DNA insights in search of novel genes/taxa for production of biofuels and biomaterials
Author:Juhi Gupta, Deodutta Roy, Indu Shekhar Thakur
Journal: Biomass, Biofuels, Biochemicals
Year: 2022
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45)Title: Role of forest site type in determining bacterial and biochemical properties of soil
Author: Małgorzata Baćmaga, Jadwiga Wyszkowska, Agata Borowik
Journal: Ecological Indicators
Year: 2022
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46)Title: Advances, challenges, and opportunities in DNA sequencing technology
Author: Francisco J. Enguita, Ana Lúcia Leitão
Journal: New Frontiers and Applications of Synthetic Biology
Year: 2022
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47)Title: Triclosan enriched resistance genes more easily than copper in the presence of environmental tetracycline in aerobic granular sludge system
Author: Dingchang Li, Jingfeng Gao, Huihui Dai, Zhiqi Wang, Yingchao Cui, Yifan Zhao, Zhixiang Zhou
Journal: Science of The Total Environment
Year: 2022
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48)Title: Comprehensive Gut Microbiota and Drug Processing
Author: Susannah Selber-Hnatiw
Journal: Comprehensive Gut Microbiota
Year: 2022
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49)Title: Metabolic engineering of Oryza sativa for complete biodegradation of thiocyanate
Author: Jian-Jie Gao, Bo Wang
Journal: Science of The Total Environment
Year: 2022
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50)Title: Gut microbiota analysis and gene function prediction among young and adult Larus saundersi with habitat soil in the Yellow River Delta
Author: Junfeng Chen, Yuling Xu, Yanyan Liu, Kai Liu, Yiqun Wu, Yiwen Zhang, Yongyue Zhao, Meizhen Tang, Renjun Wang, Yuewei Yang
Journal: Bioresource Technology Reports
Year: 2022
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1)Title: Nanopore sequencing and its application to the study of microbial communities
Author: Laura Ciuffreda, Héctor Rodríguez-Pérez, Carlos Flores
Journal: Computational and Structural Biotechnology Journal
Year: 2021
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2)Title: Virus Bioinformatics
Author: Nikolaos Pappas, Simon Roux, Martin Hölzer, Kevin Lamkiewicz, Florian Mock, Manja Marz, Bas E.Dutilh
Journal: Encyclopedia of Virology
Year: 2021
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3)Title: Metagenomic tools in microbial ecology research
Author: Neslihan Taş, Anniek EE de Jong, Yaoming Li, Gareth Trubl, Yaxin Xue, Nicholas C Dove
Journal: Current Opinion in Biotechnology
Year: 2021
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4)Title: Hydrocarbon substrate richness impacts microbial abundance, microbiome composition, and hydrocarbon loss
Author: Terrence H.Bell, Nina Camillone, Katrina Abram, Mary Ann Bruns, Etienne Yergeau, Marc St-Arnaud
Journal: Applied Soil Ecology
Year: 2021
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5)Title: Application of Omics Technologies for Microbial Community Structure and Function Analysis in Contaminated Environment
Author: Vineet Kumar, Kshitij Singh, Maulin P. Shah, Ajay Kumar Singh, Adarsh Kumar, Yogesh Kumar
Journal: Wastewater Treatment
Year: 2021
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6)Title: Genome-Resolved Metagenomics Is Essential for Unlocking the Microbial Black Box of the Soil
Author: Leandro NascimentoLemos, Lucas William Mende2, Petr Baldrian, Victor Satler Pylro
Journal: Trends in Microbiology
Year: 2021
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7)Title: Reshaped structure of microbial community within a subsurface flow constructed wetland response to the increased water temperature: Improving low-temperature performance by coupling of water-source heat pump
Author: Hao Wang, Duo Xu, Jinlong Han, Runyu Xu, Dongyun Han
Journal: Science of The Total Environment
Year: 2021
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8)Title: Evaluation of microbial diversity of three recreational water bodies using 16S rRNA metagenomic approach
Author: Omolola C.Betiku, Keawin C. Sarjeant, Lucy W. Ngatia, Monica O. Aghimien, Caroline O. Odewumi, Lekan M. Latinwo
Journal: Science of The Total Environment
Year: 2021
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9)Title: Succession of the microbial communities and function prediction during short-term peach sawdust-based composting
Author: Yu-Xin Guo, Qing-Jun Chen, Yong Qin, Ya-Ru Yang, Qi-Zhi Yang, Yue-Xing Wang, Zi-an Cheng, Na Cao, Guo-Qing Zhang
Journal: Bioresource Technology
Year: 2021
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10)Title: Geochemical and microbial insights into vertical distributions of genetic potential of N-cycling processes in deep-sea sediments
Author: Genmei Lin, Jing Huang, Jianguo Lu, Ming Su, Bangqi Hu, Xianbiao Lin
Journal: Ecological Indicators
Year: 2021
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11)Title: Effects of different antibiotic operation modes on anaerobic digestion of dairy manure: Focus on microbial population dynamics
Author: Jingwei Ma, Linxiang Shu, Shannon M. Mitchell, Liang Yu, Quanbao Zhao, Craig Frear
Journal: Journal of Environmental Chemical Engineering
Year: 2021
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12)Title: Benthic prokaryotic microbial community assembly and biogeochemical potentials in E. coli - Stressed aquatic ecosystems during plant decomposition☆
Author: Li Gu, Jian-yi Wu, Zu-lin Hua
Journal: Environmental Pollution
Year: 2021
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13)Title: Microbial study of lettuce and agriculture water used for lettuce production at Singapore urban farms
Author: Cliff An Ting Tham, Ye Htut Zwe, Dan Li
Journal: Food Control
Year: 2021
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14)Title: Changes in microbial communities and their predictive functionalities during fermentation of toddy, an alcoholic beverage of India
Author: Souvik Das, Jyoti Prakash Tamang
Journal: Microbiological Research
Year: 2021
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15)Title: Toxic effects of cadmium and lead exposure on intestinal histology, oxidative stress response, and microbial community of Pacific white shrimp Litopenaeus vannamei
Author: Yafei Duan, Yun Wang, Jianhua Huang, Hua Li, Hongbiao Dong, Jiasong Zhang
Journal: Marine Pollution Bulletin
Year: 2021
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16)Title: High time-resolved characterization of airborne microbial community during a typical haze pollution process
Author: Zhengsheng Xie, Shengli Du, Tianfeng Ma, Junli Hou, Xuelin Zeng, Yanpeng Li
Journal: Journal of Hazardous Materials
Year: 2021
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17)Title: Intestinal microbial diversity is higher in Pacific abalone (Haliotis discus hannai) with slower growth rates
Author: Mi-Jin Choi, Young Dae Oh, Yeo Reum Kim, Han Kyu Lim, Jong-Myoung Kim
Journal: Aquaculture
Year: 2021
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18)Title: Microbial community dynamic shifts associated with sulfamethoxazole degradation in microbial fuel cells
Author: Binghan Xie, Heng Liang, Hong You, Shihai Deng, Zhongsen Yan, Xiaobin Tang
Journal: Chemosphere
Year: 2021
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19)Title: Polystyrene microplastics alleviate the effects of sulfamethazine on soil microbial communities at different CO2 concentrations
Author: Meiling Xu, Wenchao Du, Fuxun Ai, Fen Xu, Jianguo Zhu, Ying Yin, Rong Ji, Hongyan Guo
Journal: Journal of Hazardous Materials
Year: 2021
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20)Title: Acenaphthene biodegradation and structural and functional metagenomics of the microbial community of an acenaphthene-enriched animal charcoal polluted soil
Author: Lateef B. Salam, Oluwafemi S. Obayori, Mathew O. Ilori, Olukayode O. Amund
Journal: Biocatalysis and Agricultural Biotechnology
Year: 2021
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21)Title: Effects of increasing lime application rates on microbial diversity and community structure in paddy soils
Author: Shengnan Li, Xionghui Ji, Chen Chao, Zhaobing Liu, Jian Zhu, Hua Peng
Journal: Applied Soil Ecology
Year: 2021
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22)Title: Biochar alters soil microbial communities and potential functions 3–4 years after amendment in a double rice cropping system
Author: Cong Wanga,b, Dan Chen, Jianlin Shen, Quan Yuan, Fenliang Fan, Wenxue Wei, Yong Li, Jinshui Wu
Journal: Agriculture, Ecosystems & Environment
Year: 2021
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23)Title: Insights into two stable mainstream deammonification process and different microbial community dynamics at ambient temperature
Author: Tao Xiang, Hong Liang, Peng Wang, Dawen Gao
Journal: Bioresource Technology
Year: 2021
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24)Title: Genomic and functional potential of the immobilized microbial consortium MCSt-1 for wastewater treatment
Author: Varsha Jha, Nishant A. Dafale, Zubeen Hathi, Hemant Purohit
Journal: Science of The Total Environment
Year: 2021
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25)Title: Enhanced pollutant removal from rural non-point source wastewater using a two-stage multi-soil-layering system with blended carbon sources: Insights into functional genes, microbial community structure and metabolic function
Author: Qi Zhou, Haimeng Sun, Lixia Jia, Liu Zhao, Weizhong Wu
Journal: Chemosphere
Year: 2021
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26)Title: Microbial-based inoculants in sustainable agriculture: Current perspectives and future prospects
Author: Ajinath Dukare, Sangeeta Paul, Roshan Kumar, Vikas Sharma
Journal: Biofertilizers
Year: 2021
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27)Title: Biodiversity of magnetotactic bacteria in the tropical marine environment of Singapore revealed by metagenomic analysis
Author: Shi Ming Tan, Muhammad Hafiz Ismail, Bin Cao
Journal: Environmental Research
Year: 2021
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28)Title: Detoxification of azo dye Direct Black G by thermophilic Anoxybacillus sp. PDR2 and its application potential in bioremediation
Author: Guotao Chen, Xuejiao An, Hanguang Li, Fenju Lai, En Yuan, Xiang Xia, Qinghua Zhang
Journal: Ecotoxicology and Environmental Safety
Year: 2021
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29)Title: Bacteriophage ecology of fermented foods: anything new under the sun?
Author: Thomas Paillet, Eric Dugat-Bony
Journal: Current Opinion in Food Science
Year: 2021
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30)Title: Encrypted antimicrobial peptides from proteins present in the plasma of the millipede Rhinocricus sp.
Author: Paula J. Segura-Ramírez, Pedro Machado de Godoy, Ivan N. Avino, Pedro I. Silva Junior
Journal: Journal of Proteomics
Year: 2021
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31)Title: Recent advances in heterologous expression of natural product biosynthetic gene clusters in Streptomyces hosts
Author: Hahk-Soo Kang, Eung-Soo Kim
Journal: Current Opinion in Biotechnology
Year: 2021
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32)Title: Genomics as a potential tool to unravel the rhizosphere microbiome interactions on plant health
Author: P.Priya, B. Aneesh, K. Harikrishnan
Journal: Journal of Microbiological Methods
Year: 2021
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33)Title: Roadmap for Managing SARS-CoV-2 and other Viruses in the Water Environment for Public Health
Author: Gang Liu, Jiuhui Qu, Joan Rose, Gertjan Medema
Journal: Engineering
Year: 2021
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34)Title: In-depth analysis of the mechanisms of aloe polysaccharides on mitigating subacute colitis in mice via microbiota informatics
Author: Chang Liu, Bin Hu, Yuliang Cheng, Yahui Guo, Weirong Yao, He Qian
Journal: Carbohydrate Polymers
Year: 2021
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35)Title: Unraveling bacterial community structure and function and their links with natural salinity gradient in the Yellow River Delta
Author: Zifang Chi, Yuhuan Zhu, Huai Li, Baixing Yan
Journal: Science of The Total Environment
Year: 2021
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36)Title: Yarrowia lipolytica engineering as a source of microbial cell factories
Author
Author: Catherine Madzak
Journal: Microbial Cell Factories Engineering for Production of Biomolecules
Year: 2021
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37)Title: Distinct patterns of abundant and rare subcommunities in paddy soil during wetting–drying cycles
Author: Huan-Qin Li, Hu Li, Xin-Yuan Zhou, Ying-Jia Shen, Jian-Qiang Su
Journal: Science of The Total Environment
Year: 2021
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38)Title: Effects of Fe2O3 nanoparticles on extracellular polymeric substances and nonylphenol degradation in river sediment
Author: Qilu Cheng, Hui Jiang, Ying Jiang, Cai Hui, Ligen Xu, Yuhua Zhao, Linna Du
Journal: Science of The Total Environment
Year: 2021
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39)Title: Deciphering edaphic bacterial community and function potential in a Chinese delta under exogenous nutrient input and salinity stress
Author: Zifang Chi, Shijie Ju, Huai Li, Jiuling Li, Haitao Wu, Baixing Yan
Journal: CATENA
Year: 2021
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40)Title: Plant microbiome structure and benefits for sustainable agriculture
Author: Lidiane Figueiredo Santos, Fabio Lopes Olivares
Journal: Current Plant Biology
Year: 2021
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41)Title: Enzyme discovery and engineering for sustainable plastic recycling
Author: Baotong Zhu, Dong Wang, Na Wei
Journal: Trends in Biotechnology
Year: 2021
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42)Title: Marine Bacteriophages
Author: Vera Bischoff, Falk Zucker, Cristina Moraru
Journal: Encyclopedia of Virology
Year: 2021
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43)Title: Solving the structural puzzle of bacterial glycome
Author: Roberta Marchetti, Rosa Ester Forgione, Ferran Nieto Fabregat, Cristina Di Carluccio, Antonio Molinaro, Alba Silipo
Journal: Current Opinion in Structural Biology
Year: 2021
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44)Title: Bacterial diversity analysis in Kazakh fermented milks Shubat and Ayran by combining culture-dependent and culture-independent methods
Author: Sagyman Zhadyra, Xiao Han, Bakytzhan B. Anapiyayev, Fei Tao, Ping Xu
Journal: LWT
Year: 2021
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45)Title: Biological detoxification and decolorization enhancement of azo dye by introducing natural electron mediators in MFCs
Author: Tao Li, Hai-Liang Song, Han Xu, Xiao-Li Yang, Qiao-Ling Chen
Journal: Journal of Hazardous Materials
Year: 2021
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46)Title: Isolating and characterizing translationally active fraction of anammox microbiota using bioorthogonal non-canonical amino acid tagging
Author: Liming Chen, Bixi Zhao, Xiang Li, Zhanwen Cheng, Ren'an Wu, Yu Xia
Journal: Chemical Engineering Journal
Year: 2021
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47)Title: Response of antibiotic and heavy metal resistance genes to tetracyclines and copper in substrate-free hydroponic microcosms with Myriophyllum aquaticum
Author: Xuan Guo, Lin Zhu, Hua Zhong, Peng Li, Chengjun Zhang, Dan Wei
Journal: Journal of Hazardous Materials
Year: 2021
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48)Title: Proteomics in fisheries and aquaculture: An approach for food security
Author: Mehar Un Nissa, Nevil Pinto, Haifa Parkar, Mukunda Goswami, Sanjeeva Srivastava
Journal: Food Control
Year: 2021
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49)Title: Functional role of mixed-culture microbe in photocatalysis coupled with biodegradation: Total organic carbon removal of ciprofloxacin
Author: Yidi Li, Lixiang Chen, Xiaochun Tian, Lifeng Lin, Rui Ding, Weifu Yan, Feng Zhao
Journal: Science of The Total Environment
Year: 2021
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50)Title: Bioinformatics and computational tools in bioremediation and biodegradation of environmental pollutants
Author: Priyanka Kumari, Yogesh Kumar
Journal: Bioremediation for Environmental Sustainability
Year: 2021
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1)Title: Quantitative microbial risk assessment for Salmonella: Inclusion of whole genome sequencing and genomic epidemiological studies, and advances in the bioinformatics pipeline
Author: Jinyao Chen, Shraddha Karanth, Abani K.Pradhan
Journal: Journal of Agriculture and Food Research
Year: 2020
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2)Title: Dynamic change of bacterial community during dairy manure composting process revealed by high-throughput sequencing and advanced bioinformatics tools
Author: Xiao-Zhong Zhong, Xiao-Xing Li, Yan Zeng, Shi-Peng Wang, Zhao-Yong Sun, Yue-Qin Tang
Journal: Bioresource Technology
Year: 2020
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3)Title: Carbofuran toxicity and its microbial degradation in contaminated environments
Author: Sandhya Mishra, Wenping Zhang, Ziqiu Lin, Shimei Pang, Yaohua Huang, Pankaj Bhatt, Shaohua Chen
Journal: Chemosphere
Year: 2020
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4)Title: Metagenomic data on bacterial diversity profiling of high-microbial-abundance tropical marine sponges Aaptos aaptos and Xestospongia muta from waters off terengganu, South China Sea
Author: Tan Suet MayAmelia, Nyok-Sean Lau, Al-Ashraf Abdullah Amirul, Kesaven Bhubalan
Journal: Data in Brief
Year: 2020
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5)Title: Multi-chassis engineering for heterologous production of microbial natural products
Author: Jing Ke, Yasuo Yoshikuni
Journal: Current Opinion in Biotechnology
Year: 2020
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6)Title: Microbial mechanisms responsible for the variation of soil Cd availability under different pe+pH environments
Author: Meng Wang, Shibao Chen, Li Chen, Duo Wang
Journal: Ecotoxicology and Environmental Safety
Year: 2020
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7)Title: Platforms for elucidating antibiotic resistance in single genomes and complex metagenomes
Author: Chhedi Lal Gupta, Rohit Kumar Tiwari, Eddie Cytryn
Journal: Environment International
Year: 2020
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8)Title: Microbial communities responded to tetracyclines and Cu(II) in constructed wetlands microcosms with Myriophyllum aquaticum
Author: Xuan Guo,Hua Zhong, Peng Li, Chengjun Zhang
Journal: Ecotoxicology and Environmental Safety
Year: 2020
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9)Title: Reduced co-occurrence and ion-specific preferences of soil microbial hub species after ten years of irrigation with brackish water
Author: Yaxian Hu, Xianwen Li, Menggui Jin, Rui Wang, Junying Chen, Shengli Guo
Journal: Soil and Tillage Research
Year: 2020
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10)Title: From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
Author: Clémence Frioux, Dipali Singh, Tamas Korcsmaros, Falk Hildebrand
Journal: Computational and Structural Biotechnology Journal
Year: 2020
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11)Title: Metagenomic analysis of autochthonous microbial biomass from banana waste: Screening design of factors that affect hydrogen production
Author: Raissa Cristina da SilvaMazareli, Alejandra Carolina Villa-Montoya, Tiago Palladino Delforno, Victor Borin Centurion, Valéria Maia de Oliveira, Edson Luiz Silva, Maria Bernadete Amâncio Varesche
Journal: Biomass and Bioenergy
Year: 2020
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12)Title: Characteristics of long-term changes in microbial communities from contaminated sediments along the west coast of South Korea: Ecological assessment with eDNA and physicochemical analyses
Author: Aslan Hwanhwi Lee, Junghyun Lee, Junsung Noh, Changkeun Lee, Seongjin Hong, Bong-Oh Kwon, Jae-Jin Kim, Jong Seong Khim
Journal: Marine Pollution Bulletin
Year: 2020
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13)Title: LDPE microplastics significantly alter the temporal turnover of soil microbial communities
Author: Jie Wang, Muke Huang, Qian Wang, Yuanze Sun, Yanran Zhao, Yi Huang
Journal: Science of The Total Environment
Year: 2020
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14)Title: Soil microbial succession with soil development since costal reclamation
Author: Xiaohan Wang, Jianghua Yang, Xuefeng Xie, Xinjian Chen, Lijie Pu, Xiaowei Zhang
Journal: CATENA
Year: 2020
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15)Title: Effects of di-n-butyl phthalate and di-2-ethylhexyl phthalate on pollutant removal and microbial community during wastewater treatment
Author: Qun Wang, Lanhui Jiang, Chengran Fang, Liang Chen
Journal: Ecotoxicology and Environmental Safety
Year: 2020
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16)Title: Exploring the effects of volcanic eruption disturbances on the soil microbial communities in the montane meadow steppe
Author: Jin Chen, Yuqing Guo, Fansheng Li, Yaxin Zheng, Daolong Xu, Haijing Liu, Xinyan Liu, Xinyu Wang, Yuying Bao
Journal: Environmental Pollution
Year: 2020
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17)Title: Influence of invasive earthworms (Amynthas spp.) on Wisconsin forest soil microbial communities and soil chemistry
Author: Gabriel J.Price-Christenson, Marie R.Johnston, Bradley M.Herrick, Anthony C.Yannarell
Journal: Soil Biology and Biochemistry
Year: 2020
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18)Title: Assessment of polycyclic aromatic hydrocarbon contamination in the Sundarbans, the world’s largest tidal mangrove forest and indigenous microbial mixed biofilm-based removal of the contaminants
Author: Saranya Balu, Shantanu Bhunia, Ratan Gachhui, Joydeep Mukherjee
Journal: Environmental Pollution
Year: 2020
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19)Title: Structure of microbial communities in amended and unamended acid-generating mine wastes along gradients of soil amelioration and revegetation
Author: Asma Asemaninejad, Kimber Munford, Shaun Watmough, Daniel Campbell, Susan Glasauer, Nathan Basiliko, Nadia Mykytczuk
Journal: Applied Soil Ecology
Year: 2020
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20)Title: Degradation of 2-mercaptobenzothizaole in microbial electrolysis cells: Intermediates, toxicity, and microbial communities
Author: M. IsabelSan-Martín, Adrián Escapa, Raúl M.Alonso, Moisés Canle, Antonio Morán
Journal: Science of The Total Environment
Year: 2020
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___________________________________________________________________________________________________________________________________
1)Title: Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils
Author: Songsong Gu, Qiulong Hu, Yuqi Cheng, Lianyang Bai, Zhonghua Liu, Wenjun Xiao, Zhihua Gong, Yueni Wu, Kai Feng, Ye Deng, Lin Tan
Journal: Soil and Tillage Research
Year: 2019
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2)Title: Bioinformatics applied to biotechnology: A review towards bioenergy research
Author: L.M.de Carvalha, G.Borellia, A.P.Camargo, M.A.de Assis, S.M.F.de Ferraz, M.B.Fiamenghi, J.Joséa, L.S.Mofatto, S.T.Nagamatsu, G.F.Persinoti, N.V.Silva, A.A.Vasconcelos, G.A.G.Pereira, M.F.Carazzolle
Journal: Biomass and Bioenergy
Year: 2019
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3)Title: Characterization of the microbial community structure in intestinal segments of yak (Bos grunniens)
Author: Lihong Zhang, Xiong Jiang, Aoyun Li, Muhammad Waqas, Xing Gao, Kun Li, Guoping Xie, Jialu Zhang, Khalid Mehmood, Suonan Zhao, Basang Wangdui, Jiakui Li
Journal: Anaerobe
Year: 2019
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4)Title: Dynamics, biodegradability, and microbial community shift of water-extractable organic matter in rice–wheat cropping soil under different fertilization treatments
Author: Cai Hui, Bing Liu, Ran Wei, Hui Jiang, Yuhua Zhao, Yongchao Liang, Qichun Zhang, Ligen Xu
Journal: Environmental Pollution
Year: 2019
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5)Title: Genome Sequence Databases: Types of Data and Bioinformatic Tools?
Author: Ana Gutiérrez-Preciado, Philippe Deschamps, Tom O.Delmont, Claudia Chica, Nathan A.M.Chrismas, Ricardo C.Rodríguez de la Vega
Journal: Encyclopedia of Microbiology
Year: 2019
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6)Title: Microbial community composition and network analyses in arid soils of the Patagonian Monte under grazing disturbance reveal an important response of the community to soil particle size
Author: Magalí S.Marcos, Mónica B.Bertiller, Nelda L.Olivera
Journal: Applied Soil Ecology
Year: 2019
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7)Title: Microbial community composition on grape surface controlled by geographical factors of different wine regions in Xinjiang, China
Author: Songsong Gu, Qiulong Hu, Yuqi Cheng, Lianyang Bai, Zhonghua Liu, Wenjun Xiao, Zhihua Gong, Yueni Wu, Kai Feng, Ye Deng, Lin Tan
Journal: Food Research International
Year: 2019
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8)Title: Microbial lipids from industrial wastes using xylose-utilizing Ashbya gossypii strains
Author: David Díaz-Fernández, Tatiana Q.Aguiar, Victoria Isabel Martín, Aloia Romaní, Rui Silva, Lucília Domingues, José Luis Revuelta, Alberto Jiménez
Journal: Bioresource Technology
Year: 2019
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9)Title: Response and recovery of microbial communities subjected to oxidative and biological treatments of 1,4-dioxane and co-contaminants
Author: Yu Miaoa, Nicholas W.Johnson, Phillip B.Gedalanga, David Adamson, Charles Newell, Shaily Mahendra
Journal: Water Research
Year: 2019
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10)Title: Selenium (Se) reduces Sclerotinia stem rot disease incidence of oilseed rape by increasing plant Se concentration and shifting soil microbial community and functional profiles
Author: Kang Liu, Miaomiao Cai, Chengxiao Hu, Xuecheng Sun, Qin Cheng, Wei Jia, Tao Yang, Min Nie, Xiaohu Zhao
Journal: Environmental Pollution
Year: 2019
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11)Title: Shift of the microbial communities from exposed sandstone rocks to forest soils during pedogenesis
Author: Yaping Liu, Meixi Lu, Xiaowen Zhang, Qibiao Sun, Renlu Liu, Bin Lian
Journal: International Biodeterioration & Biodegradation
Year: 2019
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12)Title: Soil biofilm formation enhances microbial community diversity and metabolic activity
Author: Yichao Wu, Peng Cai, Xinxin Jing, Xueke Niu, Dandan Ji, Noha Mohamed Ashry, Chunhui Gao, Qiaoyun Huang
Journal: Environment International
Year: 2019
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13)Title: The Impact of Bioinformatics Tools in the Development of Antimicrobial Drugs and Other Agents
Author: Swetha Kumari Koduru
Journal: Recent Developments in Applied Microbiology and Biochemistry
Year: 2019
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14)Title: Water and Sediment Act as Reservoirs for Microbial Taxa Associated with Invasive Dreissenid Mussels
Author: Prince P.Mathai, Paolo Magnone, Hannah M.Dunn, Michael J.Sadowsky
Journal: Science of The Total Environment
Year: 2019
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15)Title: Whole metagenomic sequencing to characterize the sediment microbial community within the Stellwagen Bank National Marine Sanctuary and preliminary biosynthetic gene cluster screening of Streptomyces scabrisporus
Author: Lina Heinrichs, Semra A.Aytur, John P.Bucci
Journal: Marine Genomics
Year: 2019
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_____________________________________________________________________________________________________________________
1)Title: A primer on microbial bioinformatics for nonbioinformaticians
Author: J.A.Carriço, M.Rossi, J.Moran-Gilad, G.Van Domselaar, M.Ramirez
Journal: Clinical Microbiology and Infection
Year: 2018
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2)Title: A resource provisioning framework for bioinformatics applications in multi-cloud environments
Author: Izzet F.Senturk, P.Balakrishnan, AnasAbu-Doleh, Kamer Kaya, Qutaibah Malluhi, Ümit V.Çatalyürek
Journal: Future Generation Computer Systems
Year: 2018
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3)Title: Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia
Author: Danilo Elton Evangelista, Marco Antonio SeikiKadowaki, Bruno Luan Mello, Igor Polikarpov
Journal: International Journal of Biological Macromolecules
Year: 2018
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4)Title: Bioinformatics Principles for Deciphering Cardiovascular Diseases
Author: L. Shu, D. Arneson, X. Yang
Journal: Encyclopedia of Cardiovascular Research and Medicine
Year: 2018
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5)Title: Changes in nitrogen-cycling microbial communities with depth in temperate and subtropical forest soils
Author: Ruifei Wang, Yan Wang, Qingxiang Yang, Chunxiao Kang, Mingjun Li
Journal: Applied Soil Ecology
Year: 2018
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6)Title: Characterization of functional microbial communities involved in diazo dyes decolorization and mineralization stages
Author: Yuling Zhu, Jiali Xu, Xiwei Cao, Yutong Cheng, Tingting Zhu
Journal: International Biodeterioration & Biodegradation
Year: 2018
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7)Title: Complete genome sequence provides insights into the biodrying-related microbial function of Bacillus thermoamylovorans isolated from sewage sludge biodrying material
Author: Lu Cai, Sheng-Wei Zheng, Yu-Jun Shen, Guo-Di Zheng, Hong-Tao Liu, Zhi-Ying Wu
Journal: Bioresource Technology
Year: 2018
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8)Title: Contributions of the microbial community and environmental variables to antibiotic resistance genes during co-composting with swine manure and cotton stalks
Author: Ranran Zhang, Jie Gu, Xiaojuan Wang, Yang Li, Kaiyu Zhang, Yanan Yin, Xin Zhang
Journal: Journal of Hazardous Materials
Year: 2018
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9)Title: Early-Life Formation of the Microbial and Immunological Environment of the Human Airways
Author: Céline Pattaroni, Martin L.Watzenboeck, Sabrina Schneidegger, Silas Kieser, Nicholas C.Wong, Eric Bernasconi, Julie Pernot, Louis Mercier, Sylvia Knapp, Laurent P.Nicod, Colin P.Marsland, Matthias Roth-Kleiner, Benjamin J.Marsland
Journal: Cell Host & Microbe
Year: 2018
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10)Title: Effects of microbial diversity on nitrite concentration in pao cai, a naturally fermented cabbage product from China
Author: Zhaoxia Wang, Yuyu Shao
Journal: Food Microbiology
Year: 2018
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11)Title: Effects of voltage on sulfadiazine degradation and the response of sul genes and microbial communities in biofilm-electrode reactors
Author: Zackary L.Jones, Kristin M.Mikkelson, ScottNygren, David L.Sedlak, Jonathan O.Sharp
Journal: Water Research
Year: 2018
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12)Title: Establishment and convergence of photosynthetic microbial biomats in shallow unit process open-water wetlands
Author: Zackary L.Jones, Kristin M.Mikkelson, Scott Nygren, David L.Sedlak, Jonathan O.Sharp
Journal: Water Research
Year: 2018
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13)Title: Exploration and exploitation of the environment for novel specialized metabolites
Author: Yuqian Tang, Guirui Yu, Xinyu Zhang, Qiufeng Wang, Jianping Ge, Shuang Liu
Journal: Current Opinion in Biotechnology
Year: 2018
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14)Title: Growth, detection and virulence of Listeria monocytogenes in the presence of other microorganisms: microbial interactions from species to strain level
Author: Evangelia A.Zilelidou, Panagiotis N.Skandamis
Journal: International Journal of Food Microbiology
Year: 2018
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15)Title: Impact of the start-up process on the microbial communities in biocathodes for electrosynthesis
Author: Raúl Mateos, Ana Sotres, Raúl M.Alonso, Adrián Escapa, Antonio Morán
Journal: Bioelectrochemistry
Year: 2018
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16)Title: Microbial community dynamics of Dan'er barley grain during the industrial malting process
Author: Xiaomin Li, Guolin Cai, Dianhui Wu, Ming Zhang, Cai Lin, Jian Lu
Journal: Food Microbiology
Year: 2018
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17)Title: Microbial electrosynthesis (MES) from CO2 is resilient to fluctuations in renewable energy supply
Author: Lu Cai, Sheng-Wei Zheng, Yu-Jun Shen, Guo-Di Zheng, Hong-Tao Liu, Zhi-Ying Wu
Journal: Energy Conversion and Management
Year: 2018
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18)Title: Microbial induced mineral precipitations caused by nitrate treatment for souring control during microbial enhanced oil recovery (MEOR)
Author: Nicole Dopffel, Felix Kögler, Holger Hartmann, Paul Igor Costea, Eva Mahler, Andrea Herold, Hakan Alkan
Journal: International Biodeterioration & Biodegradation
Year: 2018
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19)Title: Natural revegetation of a semiarid habitat alters taxonomic and functional diversity of soil microbial communities
Author: Yanqing Guo, Xiaotian Chen, Yuanyuan Wu, Lu Zhang, Jimin Cheng, Gehong Wei, Yanbing Lin
Journal: Science of The Total Environment
Year: 2018
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20)Title: On the development of an open and collaborative bioinformatics research environment
Author: Alexandros Kanterakis, Nikos Karacapilidisb,Lefteris Koumakis, George Potamias
Journal: Procedia Computer Science
Year: 2018
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21)Title: Operation optimization of a photo-sequencing batch reactor for wastewater treatment: Study on influencing factors and impact on symbiotic microbial ecology
Author: Jianfeng Ye, Junyu Liang, Liang Wang, Giorgos Markou, Qilong Jia
Journal: Bioresource Technology
Year: 2018
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22)Title: Performances and structures of functional microbial communities in the mono azo dye decolorization and mineralization stages
Author: Yuling Zhu, Xiwei Cao, Yutong Cheng, Tingting Zhu
Journal: Chemosphere
Year: 2018
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23)Title: Plant, microbial community and soil property responses to an experimental precipitation gradient in a desert grassland
Author: Lihua Zhang, Zhong kui Xie, Ruifeng Zhao, Yubao Zhang
Journal: Applied Soil Ecology
Year: 2018
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24)Title: Role of earthworms' mucus in vermicomposting system: Biodegradation tests based on humification and microbial activity
Author: Kui Huang, Hui Xia
Journal: Science of The Total Environment
Year: 2018
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25)Title: Role of sulfate on the potential biodegradation of pentabromodiphenyl ether (BDE-99) in soil columns with reclaimed water and microbial community
Author: Yuling Zhu, Jiali Xu, Xiwei Cao, Yutong Cheng, Tingting Zhu
Journal: International Biodeterioration & Biodegradation
Year: 2018
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26)Title: Simultaneous removal of organic matter and iron from hydraulic fracturing flowback water through sulfur cycling in a microbial fuel cell
Author: Xiaoting Zhang, Daijun Zhang, Yongkui Huang, KaiZhang, PeiliLu
Journal: Water Research
Year: 2018
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27)Title: Unraveling the characteristics of the microbial community and potential pathogens in the rhizosphere soil of Rehmannia glutinosa with root rot disease
Author: Ruifei Wang, Yan Wang, Qingxiang Yang, Chunxiao Kang, Mingjun Li
Journal: Applied Soil Ecology
Year: 2018
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28)Title: Ureolytic microbial community is modulated by fertilization regimes and particle-size fractions in a Black soil of Northeastern China
Author: Li Wang, Xuesong Luo, Hao Liao, Wenli Chen, Dan Wei, Peng Cai, Qiaoyun Huang
Journal: Soil Biology and Biochemistry
Year: 2018
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29)Title: Long-term fire management history affects N-fertilization sensitivity, but not seasonality, of grassland soil microbial communities
Author: Christine M.Carson, Lydia H.Zeglin
Journal: Soil Biology and Biochemistry
Year: 2018
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30)Title: Silage review: Using molecular approaches to define the microbial ecology of silage
Author: T.A.McAllister, L.Dunière, P.Drouin§, S.Xu, Y.Wang, K.Munns, R.Zaheer
Journal: Journal of Dairy Science
Year: 2018
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_____________________________________________________________________________________________________________________
1)Title: Advances in the application of high-throughput sequencing in invertebrate virology
Author: R. van Aerle, E.M. Santos
Journal: Journal of Invertebrate Pathology
Year: 2017
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2)Title: Conversion of grassland to arable decreases microbial diversity and alters community composition
Author: Katherine E. French, Andrzej Tkacz, Lindsay A. Turnbull
Journal: Applied Soil Ecology
Year: 2017
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3)Title: Depth-resolved microbial community analyses in two contrasting soil cores contaminated by antimony and arsenic
Author: Enzong Xiao, Valdis Krumins, Tangfu Xiao, Yiran Dong, Song Tang, Zengping Ning, Zhengyu Huang, Weimin Sun
Journal: Environmental Pollution
Year: 2017
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4)Title: Impacts of conversion from secondary forests to larch plantations on the structure and function of microbial communities
Author: Weiwei Zhang, Zhitang Lu, Kai Yang, Jiaojun Zhu
Journal: Applied Soil Ecology
Year: 2017
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5)Title: Mechanisms of microbial community structure and biofouling shifts under multivalent cations stress in membrane bioreactors
Author: Yu Miao, Xuechao Guo, Wei Jiang, Xu-Xiang Zhang, Bing Wu
Journal: Journal of Hazardous Materials
Year: 2017
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6)Title: Microbial diversity of the hypersaline and lithium-rich Salar de Uyuni, Bolivia
Author: Götz Haferburg, Janosch A.D. Gröning, Nadja Schmidt, Nicolai-Alexeji Kummer, Juan Carlos Erquicia, Michael Schlömann
Journal: Microbiological Research
Year: 2017
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7)Title: Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study
Author: Richard S. Judson, Matt Martin, Grace Patlewicz, Charles E. Wood
Journal: Regulatory Toxicology and Pharmacology
Year: 2017
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8)Title: Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics
Author: N.L. Fahrenfeld, Hannah Delos Reyes, Alessia Eramo, Denise M. Akob, Adam C. Mumford, Isabelle M. Cozzarelli
Journal: Science of The Total Environment
Year: 2017
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9)Title: Study of microbial community plasticity for anaerobic digestion of vegetable waste in Anaerobic Baffled Reactor
Author: Madhuri Gulhane, Prabhakar Pandit, Anshuman Khardenavis, Dharmesh Singh, Hemant Purohit
Journal: Renewable Energy
Year: 2017
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10)Title: Wildfire impact: Natural experiment reveals differential short-term changes in soil microbial communities
Author: Miranda T. Prendergast-Miller, Alexandre B. de Menezes, Lynne M. Macdonald, Peter Toscas, Andrew Bissett, Geoff Baker, Mark Farrell, Alan E. Richardson, Tim Wark, Peter H. Thrall
Journal: Soil Biology and Biochemistry
Year: 2017
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11)Title: Comparison of two bioinformatics tools used to characterize the microbial diversity and predictive functional attributes of microbial mats from Lake Obersee, Antarcticav
Author: Hyunmin Koo, Joseph A.Hakim, Casey D.Morrow,Peter G.Eipers, Alfonso Davila, Dale T.Andersen, Asim K.Bej
Journal: Journal of Microbiological Methods
Year: 2017
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12)Title: Bioinformatics for NGS-based metagenomics and the application to biogas research
Author: Hyunmin Koo, Joseph A.Hakim, Casey D.Morrow,Peter G.Eipers, Alfonso Davila, Dale T.Andersen, Asim K.Bej
Journal: Journal of Biotechnology
Year: 2017
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13)Title: Influence of temperature on mixed microbial culture polyhydroxyalkanoate production while treating a starch industry wastewater
Author: Sebastian J�nemann, Nils Kleinb�lting, Sebastian Jaenicke, Christian Henke, Julia Hassa, Johanna Nelkner, Yvonne Stolze, Stefan P.Albaum, Andreas Schl�ter,Alexander Goesmann,Alexander Sczyrba, Jens Stoye
Journal: Journal of Environmental Chemical Engineering
Year: 2017
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14)Title: Challenges and perspectives of metaproteomic data analysis
Author: Robert Heyer,Kay Schallert, Roman Zoun, Beatrice Becher, Gunter Saake,Dirk Benndorf
Journal: Journal of Biotechnology
Year: 2017
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15)Title: Diversity changes of microbial communities into hospital surface environments
Author: Robert Heyer,Kay Schallert, Roman Zoun, Beatrice Becher, Gunter Saake,Dirk Benndorf
Journal: Journal of Infection and Chemotherapy
Year: 2017
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16)Title: Assessment of phenol effect on microbial community structure and function in an anaerobic denitrifying process treating high concentration nitrate wastewater
Author: Yu Miao, Zhu Wang, Runhu Liao, Peng Shi, Aimin Li
Journal: Chemical Engineering Journal
Year: 2017
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17)Title: Microbial community structure is affected by cropping sequences and poultry litter under long-term no-tillage
Author: A.J.Ashworth, J.M. DeBruyn, F.L.Allen, M.Radosevich, P.R.Owens
Journal: Soil Biology and Biochemistry
Year: 2017
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18)Title: Microbial community compositional analysis for membrane bioreactor treating antibiotics containing wastewater
Author: A.J.Ashworth, J.M. DeBruyn, F.L.Allen, M.Radosevich, P.R.Owens
Journal: Chemical Engineering Journal
Year: 2017
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19)Title: Response of microbial communities to supercritical CO2 and biogeochemical influences on microbially mediated CO2-saline-sandstone interactions
Author: Yijing Zhu, Yayi Wang, Xuxin Jiang, Shuai Zhou, Min Wu, Mianli Pan, Hao Chen
Journal: Chemical Geology
Year: 2017
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20)Title: Meta-omics insights in the microbial community profiling and functional characterization of fermented foods
Author: Gu Chen, Congcong Chen, Zhonghua Lei
Journal: Trends in Food Science & Technology
Year: 2017
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21)Title: Microbiome involved in microbial electrochemical systems (MESs): A review
Author: Gu Chen, Congcong Chen, Zhonghua Lei
Journal: Chemosphere
Year: 2017
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22)Title: Mechanisms of microbial community structure and biofouling shifts under multivalent cations stress in membrane bioreactors
Author: Gu Chen, Congcong Chen, Zhonghua Lei
Journal: Journal of Hazardous Materials
Year: 2017
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23)Title: Hypothesis testing and statistical analysis of microbiome
Author: Jiajun Hu,Yiyun Xue,Hongcheng Guo,Min-tian Gao, Jixiang Li, Shiping Zhang, Yiu Fai Tsang
Journal: Genes & Diseases
Year: 2017
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24)Title: Impacts of conversion from secondary forests to larch plantations on the structure and function of microbial communities
Author: Yinglin Xia, Jun Sun
Journal: Applied Soil Ecology
Year: 2017
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1)Title: Monitoring the microbial community shift throughout the shock changes of hydraulic retention time in an anaerobic moving bed membrane bioreactor
Author: Theint Theint Win, Hyemin Kim, Kangwoo Cho, Kyung Guen Song, Joonhong Park
Journal: Bioresource Technology
Year: 2016
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2)Title: Biotechnological and bioinformatics approaches for augmentation of biohydrogen production: A review
Author: Gopal Ramesh Kumar, Nupoor Chowdhary
Journal: Renewable and Sustainable Energy Reviews
Year: 2016
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3)Title: Bioinformatics aided microbial approach for bioremediation of wastewater containing textile dyes
Author: S. Senthil Kumar, S. Shantkriti, T. Muruganandham, E. Murugesh, Niraj Ranec S.P. Govindwar
Journal: Ecological Informatics
Year: 2016
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4)Title: Enhancing tetrabromobisphenol A biodegradation in river sediment microcosms and understanding the corresponding microbial community
Author: Guiying Lia, Jukun Xiong, Po Keung Wong, Taicheng An
Journal: Environmental Pollution
Year: 2016
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5)Title: Aquatic hyphomycetes in a changing environment
Author: F. Bärlocher
Journal: Fungal Ecology
Year: 2016
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6)Title: A critical review of algal biomass: A versatile platform of bio-based polyesters from renewable resources
Author: Aqdas Noreen, Khalid Mahmood Zia, Mohammad Zuber, Muhammad Ali, Mohammad Mujahid
Journal: International Journal of Biological Macromolecules
Year: 2016
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8)Title: Bioactive hydrolysates from bovine blood globulins: Generation, characterisation, and in silico prediction of toxicity and allergenicity
Author: Tomas Lafarga, Matthias Wilm, Kieran Wynne, Maria Hayes
Journal: Journal of Functional Foods
Year: 2016
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9)Title: Characterization of gene expression profiling of mouse tissues obtained during the postmortem interval
Author: Sayaka Sobue, Keita Sakata, Yuki Sekijima, Shanlou Qiao, Takashi Murate, Masatoshi Ichihara
Journal: Journal of Functional Foods
Year: 2016
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10)Title: Biological characterization of the hygrobafilomycin antibiotic JBIR-100 and bioinformatic insights into the hygrolide family of natural products
Author: Evelyn M. Molloy, Jonathan I. Tietz, Patricia M. Blair, Douglas A. Mitchell
Journal: Bioorganic & Medicinal Chemistry
Year: 2016
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11)Title: Identification and analysis of miRNAs and their targets in ginger using bioinformatics approach
Author: Noopur Singh, Swati Srivastava, Ashok Sharma
Journal: Gene
Year: 2016
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12)Title: Distribution of cold adaptation proteins in microbial mats in Lake Joyce, Antarctica: Analysis of metagenomic data by using two bioinformatics tools
Author: Hyunmin Koo, Joseph A. Hakim, Phillip R.E. Fisher, Alexander Grueneberg, Dale T. Andersen
Journal: Journal of Microbiological Methods
Year: 2016
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13)Title: Bioinformatics tools for lncRNA research
Author: Junichi Iwakiri, Michiaki Hamada, Kiyoshi Asai
Journal: Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Year: 2016
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14)Title: Clinical, genetics and bioinformatics characterization of a campomelic dysplasia case report
Author: Nerea Carvajal, Mónica Martínez-García, Monica Chagoyen, Nieves Morcillo, Ana Pino, I. Lorda, María José Trujillo-Tiebas
Journal: Gene
Year: 2016
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15)Title: Bioinformatics analysis of organizational and expressional characterizations of the IFNs, IRFs and CRFBs in grass carp Ctenopharyngodon idella
Author: Nerea Carvajal, Mónica Martínez-García, Monica Chagoyen, Nieves Morcillo, Ana Pino, I. Lorda, María José Trujillo-Tiebas
Journal: Gene
Year: 2016
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16)Title: Ready to use bioinformatics analysis as a tool to predict immobilisation strategies for protein direct electron transfer (DET)
Author: R. Cazelles, N. Lalaoui, T. Hartmann, S. Leimkühler, U. Wollenberger, M. Antonietti, S. Cosnier
Journal: Biosensors and Bioelectronics
Year: 2016
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17)Title: Identification of microRNAs correlated with citrus granulation based on bioinformatics and molecular biology analysis
Author: Jing Zhang, Miao Wang, Fansheng Cheng, Chao Dai, Yufeng Sun, Jia Lu, Yatao Huang, Minmin Li, Yan He, Fengzhong Wang, Bei Fan
Journal: Postharvest Biology and Technology
Year: 2016
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18)Title: Regulatory bioinformatics for food and drug safety
Author: Marion J. Healy, Weida Tong, Stephen Ostroff, Hans-Georg Eichler, Alex Patak, Margaret Neuspiel, Hubert Deluyker, William Slikker
Journal: Regulatory Toxicology and Pharmacology
Year: 2016
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19)Title: Making sense of genomes of parasitic worms: Tackling bioinformatic challenges
Author: Pasi K. Korhonen, Neil D. Young, Robin B. Gasser
Journal: Biotechnology Advances
Year: 2016
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20)Title: Metagenomics as a preliminary screen for antimicrobial bioprospecting
Author: Pasi K. Korhonen, Neil D. Young, Robin B. Gasser
Journal: Gene
Year: 2016
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21)Title: Aquatic hyphomycetes in a changing environment
Author: F. Bärlocher
Journal: Fungal Ecology
Year: 2016
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22)Title: Efficiency of different solarization-based ecological soil treatments on the control of Fusarium wilt and their impacts on the soil microbial community
Author: Yanlai Yao, Zhiyong Xue, Chunlai Hong, FengXiang Zhu, Xiaoyang Chen, Weiping Wang, Zucong Cai, Nan Huang, Xinqin Yang
Journal: Applied Soil Ecology
Year: 2016
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23)Title: The effect of different carbon sources on the nutritional composition, microbial community and structure of bioflocs
Author: YanFang Wei, Shao-An Liao, An-li Wang
Journal: Aquaculture
Year: 2016
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24)Title: Performance of a full-scale modified anaerobic/anoxic/oxic process: High-throughput sequence analysis of its microbial structures and their community functions
Author: Yasong Chen, Zheng Zhao, Yuke Peng, Jie Li, Lin Xiao, Liuyan Yang
Journal: Bioresource Technology
Year: 2016
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25)Title: Correlating microbial community profiles with geochemical conditions in a watershed heavily contaminated by an antimony tailing pond ?
Author: Enzong Xiao, Valdis Krumins, Song Tang, Tangfu Xiao, Zengping Ning, Xiaolong Lan, Weimin Sun
Journal: Environmental Pollution
Year: 2016
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26)Title: Soil biochar amendment shapes the composition of N2O-reducing microbial communities
Author: Johannes Harter, Pascal Weigold, Mohamed El-Hadidi, Daniel H. Huson, Andreas Kappler, Sebastian Behrens
Journal: Science of The Total Environment
Year: 2016
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27)Title: How do microbial communities in top- and subsoil respond to root litter addition under field conditions?
Author: Muhammad Sanaullah, Abad Chabbi, Pierre-Alain Maron, Karen Baumann, Vincent Tardy, Evgenia Blagodatskaya, Yakov Kuzyakov, Cornelia Rumpel
Journal: Soil Biology and Biochemistry
Year: 2016
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28)Title: Soil microbial communities as potential regulators of in situ N2O fluxes in annual and perennial cropping systems
Author: K.A. Thompson, E. Bent, D. Abalos, C. Wagner-Riddle, K.E. Dunfield
Journal: Soil Biology and Biochemistry
Year: 2016
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29)Title: Metagenomics: Probing pollutant fate in natural and engineered ecosystems
Author: Emna Bouhajja, Spiros N. Agathos, Isabelle F. George
Journal: Biotechnology Advances
Year: 2016
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30)Title: Oil sands tailings ponds harbour a small core prokaryotic microbiome and diverse accessory communities
Author: S.L. Wilson, C. Li, E. Ramos-Padrón, C. Nesbø, J. Soh, C.W. Sensen, G. Voordouw, J. Foght, L.M. Gieg
Journal: Journal of Biotechnology
Year: 2016
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____________________________________________________________________________________________________________________
1)Title: Application of bioinformatics tools and databases in microbial dehalogenation research: A review
Author: R. Satpathy, V. B. Konkimalla, J. Ratha
Journal: Applied Biochemistry and Microbiology
Year: 2015
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2)Title: Normalization of environmental metagenomic DNA enhances the discovery of under-represented microbial community members
Author: J.-B. Ramond, T.P. Makhalanyane, M.I. Tuffin, D.A. Cowan
Journal: Letters in Applied Microbiology
Year: 2015
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3)Title: Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
Author: Molly K Gibson, Kevin J Forsberg, Gautam Dantas
Journal: The ISME Journal
Year: 2015
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4)Title: The Integrated Microbial Genome Resource of Analysis
Author: Alice Checcucci, Alessio Mengoni
Journal: Bacterial Pangenomics
Year: 2015
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5)Title: Environmental Metagenomics: The Data Assembly and Data Analysis Perspectives
Author: Vinay Kumar, S. S. Maitra, Rohit Nandan Shukla
Journal: Journal of The Institution of Engineers
Year: 2015
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6)Title: Transcriptome analysis of Escherichia coli O157:H7 grown in vitro in the sterile-filtrated cecal content of human gut microbiota associated rats reveals an adaptive expression of metabolic and virulence genes
Author: Guillaume Le Bihan, Grégory Jubelin, Philippe Garneau, Annick Bernalier-Donadille, Christine Martin, Francis Beaudry, Josée Harel
Journal: Microbes and Infection
Year: 2015
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7)Title: Proteotyping: Proteomic characterization, classification and identification of microorganisms – A prospectus
Author: Roger Karlsson, Lucia Gonzales-Siles, Fredrik Boulund, Liselott Svensson-Stadler, Susann Skovbjerg, Anders Karlsson, Max Davidson, Stefan Hulth, Erik Kristianssond, Edward R.B. Moore
Journal: Systematic and Applied Microbiology
Year: 2015
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8)Title: Evaluation of Simultaneous Nutrient and COD Removal with Polyhydroxybutyrate (PHB) Accumulation Using Mixed Microbial Consortia under Anoxic Condition and Their Bioinformatics Analysis
Author: Jyotsnarani Jena, Ravindra Kumar, Anshuman Dixit, Sony Pandey, Trupti Das
Journal: PLoS
Year: 2015
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9)Title: Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust
Author: Alberto Robador, Sean P. Jungbluth, Douglas E. LaRowe, Robert M. Bowers, Michael S. Rappé, Jan P. Amend and James P. Cowen
Journal: Frontiers in Microbiology
Year: 2015
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10)Title: Possible Biomarkers for the Early Detection of HIV-associated Heart Diseases: A Proteomics and Bioinformatics Prediction
Author: Suraiya Rasheed, Rahim Hashim, Jasper S. Yan
Journal: Computational and Structural Biotechnology Journal
Year: 2015
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11)Title: In Silico Approach to Study the Regulatory Mechanisms and Pathways of Microorganisms
Author: Arun Vairagi
Journal: Applied Environmental Biotechnology: Present Scenario and Future Trends
Year: 2015
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12)Title: In-silico prediction of drug targets, biological activities, signal pathways and regulating networks of dioscin based on bioinformatics
Author: Lianhong Yin, Lingli Zheng, Lina Xu, Deshi Dong, Xu Han, Yan Qi, Yanyan Zhao, Youwei Xu and Jinyong Peng
Journal: BMC Complementary and Alternative Medicine
Year: 2015
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13)Title: Functional Genomics, Genetics, and Bioinformatics
Author: Youping Deng, Hongwei Wang, Ryuji Hamamoto, David Schaffer, and Shiwei Duan
Journal: BioMed Research International
Year: 2015
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14)Title: Nonproteinogenic D-Amino Acids at Millimolar Concentrations Are a Toxin for Anaerobic Microorganisms Relevant to Early Earth and Other Anoxic Planets
Author: Sophie L. Nixon and Charles S. Cockell
Journal: Astrobiology
Year: 2015
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15)Title: Identification of a novel carbohydrate esterase from Bjerkandera adusta: Structural and function predictions through bioinformatics analysis and molecular modeling
Author: Laura I. Cuervo-Soto, Gilberto Valdés-García, Ramón Batista-García, María del Rayo Sánchez-Carbente, Edgar Balcázar-López, Verónica Lira-Ruan, Nina Pastor and Jorge Luis Folch-Mallol
Journal: Proteins: Structure, Function, and Bioinformatics
Year: 2015
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16)Title: Physiological and evolutionary potential of microorganisms from the Canterbury Basin subseafloor, a metagenomic approach
Author: Frédéric Gaboyer , Gaëtan Burgaud , Karine Alain
Journal: FEMS Microbiology Ecology
Year: 2015
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17)Title: The effects of biochar and compost amendments on copper immobilization and soil microorganisms in a temperate vineyard
Author: K.A. Mackie, S. Marhan, F. Ditterich, H.P. Schmidt, E. Kandeler
Journal: Agriculture, Ecosystems & Environment
Year: 2015
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18)Title: Higher diversity and abundance of denitrifying microorganisms in environments than considered previously
Author: Wei Wei, Kazuo Isobe, Tomoyasu Nishizawa, Lin Zhu, Yutaka Shiratori, Nobuhito Ohte, Keisuke Koba, Shigeto Otsuka and Keishi Senoo
Journal: The ISME Journal
Year: 2015
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19)Title: Developing expertise in bioinformatics for biomedical research in Africa
Author: Thomas K. Karikari, Emmanuel Quansah, Wael M.Y. Mohamed
Journal: Applied & Translational Genomics
Year: 2015
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20)Title: Widening participation would be key in enhancing bioinformatics and genomics research in Africa
Author: Thomas K. Karikari, Emmanuel Quansah, Wael M.Y. Mohamed
Journal: Applied & Translational Genomics
Year: 2015
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21)Title: Neurogenomics: An opportunity to integrate neuroscience, genomics and bioinformatics research in Africa
Author: Thomas K. Karikari, Jelena Aleksic
Journal: Applied & Translational Genomics
Year: 2015
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22)Title: Bioinformatics in protein kinases regulatory network and drug discovery
Author: Qingfeng Chen, Haiqiong Luoc, Chengqi Zhangd, Yi-Ping Phoebe Chen
Journal: Mathematical Biosciences
Year: 2015
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23)Title: Bioinformatics analysis of gene expression profiles of osteoarthritis
Author: Qiang Wang, Yufei Li, Zhiqiang Zhang, Yongchao Fang, Xiaolei Li, Yu Sun, Chuanzhi Xiong, Lianqi Yan, Jianning Zhao
Journal: Acta Histochemica
Year: 2015
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24)Title: Analysis of Parkinson's disease pathophysiology using an integrated genomics-bioinformatics approach
Author: Li M. Fu, Katherine A. Fu
Journal: Pathophysiology
Year: 2015
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25)Title: Distribution of cold adaptation proteins in microbial mats in Lake Joyce, Antarctica: Analysis of metagenomic data by using two bioinformatics tools
Author: Hyunmin Koo, Joseph A. Hakim, Phillip R.E. Fisher, Alexander Gruneberg, Dale T. Andersen
Journal: Journal of Microbiological Methods
Year: 2015
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26)Title: Bioinformatics prioritization of SNPs perturbing microRNA regulation of hematological malignancy-implicated genes
Author: Hamid Ghaedi, Milad Bastami, Davood Zare-Abdollahi, Behnam Alipoor, Abolfazl Movafagh, Reza Mirfakhraie, Mir Davood Omrani, Andrea Masotti
Journal: Genomics
Year: 2015
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27)Title: In search of key genes associated with endometriosis using bioinformatics approach
Author: Fangmei Liu, Xiaomei Lv, Haifeng Yu, Ping Xu, Rong Ma, Kun Zou
Journal: European Journal of Obstetrics & Gynecology and Reproductive Biology
Year: 2015
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28)Title: Identification of novel and differentially expressed microRNAs in ovine ovary and testis tissues using Solexa sequencing and bioinformatics
Author: Wei-hua CHANG, Yong ZHANG, Zhang-rui CHENG, Xing-xu ZHAO, Juan-hong WANG, You-ji MA, Jun-jie HU, Quan-wei ZHANG
Journal: Journal of Integrative Agriculture
Year: 2015
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29)Title: Mining for sensitive and reliable species-specific primers for PCR for detection of Cronobacter sakazakii by a bioinformatics approach
Author: Chen Qiming, Tao Tingting, Bie Xiaomei, Lu Yingjian†, Lu Fengxia, Zhai Ligong, Lu Zhaoxin
Journal: Journal of Dairy Science
Year: 2015
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30)Title: Using combinatorial bioinformatics methods to analyze annual perspective changes of influenza viruses and to accelerate development of effective vaccines
Author: Yu-Jen Hu, Kuan-Chih Chow, Ching-Chuan Liu, Li-Jen Lin, Sheng-Cheng Wang, Shulhn-Der Wang
Journal: Journal of the Formosan Medical Association
Year: 2015
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31)Title: Application of bioinformatics in probe design enables detection of enteroviruses on different taxonomic levels by advanced in situ hybridization technology
Author: Jutta E. Laiho, Sami Oikarinen, Maarit Oikarinen, Pär G. Larsson, Virginia M. Stone, Didier Hober, Steven Oberste, Malin Flodström-Tullberg, Jorma Isola, Heikki Hyöty
Journal: Journal of Clinical Virology
Year: 2015
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32)Title: Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
Author: Andreia Varmes Fernandes, Márcio Viana Ramos, José Hélio Costa, Ilka Maria Vasconcelos, Renato de Azevedo Moreira, Frederico Bruno Mendes Batista Moreno, Maria Eliza Caldas dos Santos, José Francisco de Carvalho Gonçalves
Journal: Biochemical Systematics and Ecology
Year: 2015
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33)Title: Identification of a Human Papillomavirus–Associated Oncogenic miRNA Panel in Human Oropharyngeal Squamous Cell Carcinoma Validated by Bioinformatics Analysis of The Cancer Genome Atlas
Author: Daniel L. Miller, J. Wade Davis, Kristen H. Taylor, Jeff Johnson, Zonggao Shi, Russell Williams, Ulus Atasoy, James S. Lewis Jr., M. Sharon Stack
Journal: The American Journal of Pathology
Year: 2015
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34)Title: MicroRNA expression profiling and bioinformatics analysis of dysregulated microRNAs in vinorelbine-resistant breast cancer cells
Author: Shanliang Zhong, Tengfei Ma, Xiaohui Zhang, Mengmeng Lv, Lin Chen, Jinhai Tang, Jianhua Zhao
Journal: Gene
Year: 2015
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35)Title: Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications
Author: Fabian Steffen-Munsberg, Clare Vickers, Hannes Kohls, Henrik Land, Hendrik Mallin, Alberto Nobili, Lilly Skalden, Tom van den Bergh, Henk-Jan Joosten, Per Berglund, Matthias Höhne, Uwe T. Bornscheuer
Journal: Biotechnology Advances
Year: 2015
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36)Title: Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires
Author: Victor Greiff, Enkelejda Miho, Ulrike Menzel, Sai T. Reddy
Journal: Trends in Immunology
Year: 2015
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37)Title: Bioinformatic identification of cytochrome b5 homologues from the parasitic nematode ascaris suum and the free-living nematode Caenorhabditis elegans highlights the crucial role of A. suum adult-specific secretory cytochrome b5 in parasitic adaptation
Author: Shinzaburo Takamiya, Muneaki Hashimoto, Toshihiro Mita, Takehiro Yokota, Yoshitaka Nakajima, Fumiyuki Yamakura, Shigetoshi Sugio, Tsutomu Fujimura, Takashi Ueno, Hiroshi Yamasaki
Journal: Parasitology International
Year: 2015
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38)Title: A bioinformatic approach to check the spatial epitope structure of an immunogenic protein coded by DNA vaccine plasmids
Author: M. Ghaemi Bafghi, M.R. Bassami, Gh.R. Hashemi Tabar, M.R. Saberi, A.R. Haghparast, H. Dehghani
Journal: Journal of Theoretical Biology
Year: 2015
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39)Title: Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici
Author: Megan C. McDonald, Angela H. Williams, Andrew Milgate, Julie A. Pattemore, Peter S. Solomon, James K. Hane
Journal: Fungal Genetics and Biology
Year: 2015
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40)Title: The Screening of Genes Sensitive to Long-Term, Low-Level Microwave Exposure and Bioinformatic Analysis of Potential Correlations to Learning and Memory
Author: Ya Li ZHAO, Ying Xian LI, Hong Bo MA, Dong LI, Hai Liang LI, Rui JIANG, Guang Han KAN, Zhen Zhong YANG, Zeng Xin HUANG
Journal: Biomedical and Environmental Sciences
Year: 2015
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41)Title: Bioinformatic analysis of neurotropic HIV envelope sequences identifies polymorphisms in the gp120 bridging sheet that increase macrophage-tropism through enhanced interactions with CCR5
Author: Megan E. Mefford, Kevin Kunstman, Steven M. Wolinsky, Dana Gabuzda
Journal: Virology
Year: 2015
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42)Title: Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
Author: Matthias Farlik, Nathan C. Sheffield, Angelo Nuzzo, Paul Datlinger, Andreas Schönegger, Johanna Klughammer, Christoph Bock
Journal: Cell Reports
Year: 2015
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43)Title: Soil and Rhizosphere Associated Fungi in Grey Mangroves (Avicennia marina) from the Red Sea — A Metagenomic Approach
Author: Marta Filipa Simões, André Antunes, Cristiane A. Ottoni, Mohammad Shoaib Amini, Intikhab Alam, Hanin Alzubaidy, Noor-Azlin Mokhtar, John A.C. Archer, Vladimir B. Bajic
Journal: Genomics, Proteomics & Bioinformatics
Year: 2015
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_____________________________________________________________________________________________________________________
1)Title: A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter
Author: Mariel M. Finucane, Thomas J. Sharpton, Timothy J. Laurent, Katherine S. Pollard mail
Journal: PLoS ONE
Year: 2014
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2)Title: Bioinformatics Resources for the Management of Biological Information on Plant Responses Towards Stresses
Author: Ratna Prabha, Dhananjaya P. Singh, Vivek Keshri, Sevyaa, Arun K. Sharma
Journal: Biology of useful plants and microbes
Year: 2014
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3)Title: Does urbanization shape bacterial community composition in urban park soils? A case study in 16 representative Chinese cities based on the pyrosequencing method
Author: Hui-Juan Xu, Shun Li, Jian-Qiang Su, San'an Nie, Valerie Gibson, Hu Li, Yong-Guan Zhu
Journal: FEMS Microbiology Ecology
Year: 2014
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4)Title: Draft Genome Sequence of Brevibacillus panacihumi Strain W25, a Halotolerant Hydrocarbon-Degrading Bacterium
Author: Xinxin Wang, Decai Jin, Lisha Zhou, Liang Wu, Wei An, Yu Chen, Lin Zhao
Journal: Genome Announc
Year: 2014
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5)Title: Gene-environment interaction between SCN5A-1103Y and hypokalemia influences QT interval prolongation in African Americans: The Jackson Heart Study
Author: Ermeg L. Akylbekova, PhD, John P. Payne, MD, Christopher Newton-Cheh, MD, Warren L. May, PhD, Ervin R. Fox, MD, James G. Wilson, MD, Daniel F. Sarpong, PhD, Herman A. Taylor, MD, Joseph F. Maher, MD
Journal: American Heart Journal
Year: 2014
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6)Title: Lateral transfer of eukaryotic ribosomal RNA genes: an emerging concern for molecular ecology of microbial eukaryotes
Author: Akinori Yabuki, Takashi Toyofuku and Kiyotaka Takishita
Journal: The ISME Journal
Year: 2014
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7)Title: Metabolomic analysis of soil communities can be used for pollution assessment
Author: Oliver A.H. Jones, Stephanie Sdepanian, Steven Lofts, Claus Svendsen, David J. Spurgeon, Mahon L. Maguire, Julian L. Griffin
Journal: Environmental Toxicology and Chemistry
Year: 2014
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8)Title: Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
Author: Erik R. Hawley, , Hailan Piao, Nicole M. Scott, Stephanie Malfatti, Ioanna Pagani, Marcel , Huntemann, Amy Chen, Tijana Glavina del Rio, Brian Foster, Alex Copeland, Janet Jansson, Amrita Pati, Susannah Tringe, Jack A. Gilbert, Thomas D. Lorenson, Matthias Hess
Journal: Standards in Genomic Sciences
Year: 2014
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9)Title: Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity
Author: Fan Lü, Ariane Bize, Alain Guillot, Véronique Monnet, Céline Madigou, Olivier Chapleur, Laurent Mazéas, Pinjing He and Théodore Bouchez
Journal: The ISME Journal
Year: 2014
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10)Title: Microbial Enhanced Heavy Oil Recovery by the Aid of Inhabitant Spore-Forming Bacteria: An Insight Review
Author: Biji Shibulal, Saif N. Al-Bahry, Yahya M. Al-Wahaibi, Abdulkader E. Elshafie, Ali S. Al-Bemani, and Sanket J. Joshi
Journal: The Scientific World Journal
Year: 2014
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11)Title: Microbial leaching of metals from solid industrial wastes
Author: Debaraj Mishra, Young Ha Rhee
Journal: Journal of Microbiology
Year: 2014
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12)Title: PATRIC, the bacterial bioinformatics database and analysis resource
Author: Alice R. Wattam, David Abraham, Oral Dalay, Terry L. Disz,Timothy Driscoll, Joseph L. Gabbard, Joseph J. Gillespie, Roger Gough,Deborah Hix, Ronald Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Robert Olson, Ross Overbeek, Gordon D. Pusch, Maulik Shukla, Julie Schulman, Rick L. Stevens, Daniel E. Sullivan, Veronika Vonstein, Andrew Warren, Rebecca Will, Meredith J.C. Wilson, Hyun Seung Yoo,Chengdong Zhang, Yan Zhang and Bruno W. Sobral
Journal: Nucleic Acids Research
Year: 2014
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13)Title: Productivity and influence in bioinformatics: A bibliometric analysis using PubMed central
Author: Min Song, SuYeon Kim, Guo Zhang,Ying Ding, Tamy Chambers
Journal: Journal of the Association for Information Science and Technology
Year: 2014
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14)Title: Role of cloud computing in bioinformatics research for handling the huge biological data
Author: Radhe Shyam Thakur and Rajib Bandopadhyay
Journal: Biology of useful plants and microbes
Year: 2014
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15)Title: The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Author: Ross Overbeek, Robert Olson, Gordon D. Pusch, Gary J. Olsen,James J. Davis, Terry Disz, Robert A. Edwards, Svetlana Gerdes,Bruce Parrello, Maulik Shukla, Veronika Vonstein, Alice R. Wattam,Fangfang Xia and Rick Stevens
Journal: Nucleic Acids Research
Year: 2014
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16)Title: Translational Bioinformatics and Clinical Research Informatics
Author: C. Daniel, E. Albuisson, T. Dart, P. Avillach, M. Cuggia, Y. Guo
Journal: Medical Informatics
Year: 2014
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17)Title: A bioinformatics approach to the determination of genes involved in endophytic behavior in Burkholderia spp.
Author: Shimaila Ali, Jin Duan, Trevor C. Charles, Bernard R. Glick
Journal: Journal of Industrial Microbiology & Biotechnology
Year: 2014
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18)Title: Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing
Author: Kevin V Solomon, Charles H Haitjema, Dawn A Thompson, Michelle A O’Malley
Journal: Current Opinion in Biotechnology
Year: 2014
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19)Title: MetaRef: a pan-genomic database for comparative and community microbial genomics
Author: Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower and Nicola Segata
Journal: Nucleic Acids Research
Year: 2014
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20)Title: Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?
Author: Brian O. Bachmann, Steven G. Van Lanen, Richard H. Baltz
Journal: Journal of Industrial Microbiology & Biotechnology
Year: 2014
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21)Title: Mining locus tags in PubMed Central to improve microbial gene annotation
Author: Chris J Stubben and Jean F Challacombe
Journal: BMC Bioinformatics
Year: 2014
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22)Title: RefSeq microbial genomes database: new representation and annotation strategy
Author: Tatiana Tatusova, Stacy Ciufo, Boris Fedorov, Kathleen O’Neill and Igor Tolstoy
Journal: Nucleic Acids Research
Year: 2014
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23)Title: VAMPS: a website for visualization and analysis of microbial population structures
Author: Susan M Huse, David B Mark Welch, Andy Voorhis, Anna Shipunova, Hilary G Morrison, A Murat Eren and Mitchell L Sogin
Journal: BMC Bioinformatics
Year: 2014
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24)Title: Bioinformatic Approaches Reveal Metagenomic Characterization of Soil Microbial Community
Author: Zhuofei Xu, Martin Asser Hansen, Lars H. Hansen, Samuel Jacquiod, Søren J. Sørensen
Journal: PLoS ONE
Year: 2014
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25)Title: Comparative functional genomics of Lactobacillusspp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment
Author: Helena Mendes-Soares, Haruo Suzuki, Roxana J. Hickey and Larry J. Forney
Journal: Journal of bacteriology
Year: 2014
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26)Title: Soil Microbial Responses to Increased Moisture and Organic Resources along a Salinity Gradient in a Polar Desert
Author: David J. Van Horn, Jordan G. Okie, Heather N. Buelow, Michael N. Gooseff, John E. Barrett and Cristina D. Takacs-Vesbach
Journal: Appl. Environ. Microbio
Year: 2014
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27)Title: The Bio-Community Perl toolkit for microbial ecology
Author: Florent E. Angly, Christopher J. Fields and Gene W. Tyson
Journal: BMC Bioinformatics
Year: 2014
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28)Title: The unseen world: environmental microbial sequencing and identification methods for ecologists
Author: Naupaka Zimmerman , Jacques Izard , Christian Klatt, Jizhong Zhou, Emma Aronson
Journal: Frontiers in Ecology and the Environment
Year: 2014
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29)Title: Microbial Metabolic Potential for Carbon Degradation and Nutrient (Nitrogen and Phosphorus) Acquisition in an Ombrotrophic Peatland
Author: Xueju Lin, Malak M. Tfaily, Stefan J. Green, J. Megan Steinweg, Patrick Chanton, Aopeau Imvittaya, Jeffrey P. Chanton, William Cooper, Christopher Schadt, Joel E. Kostka
Journal: Appl. Environ. Microbiol
Year: 2014
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30)Title: Comparative Metagenomic Analysis of Human Gut Microbiome Composition Using Two Different Bioinformatic Pipelines
Author: Pankaj Kumar Arora, Hanhong Bae
Journal: BioMed Research International
Year: 2014
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31)Title: A Novel Bioinformatics Method for Efficient Knowledge Discovery by BLSOM from Big Genomic Sequence Data
Author: Yu Bai, Yuki Iwasaki, Shigehiko Kanaya, Yue Zhao, Toshimichi Ikemura
Journal: BioMed Research International
Year: 2014
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32)Title: Identifying microbes from environmental water samples in a discovery-based learning module
Author: Wenfa Ng
Journal: PeerJ PrePrints
Year: 2014
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33)Title: Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead
Author: Simon Joly,T. Jonathan Davies, Annie Archambault, Anne Bruneau, Alison Derry, Steven W. Kembel5, Pedro Peres-Neto, Jana Vamosi, Terry A. Wheeler
Journal: Molecular Ecology Resources
Year: 2014
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34)Title: Metagenomic analysis reveals microbial diversity and function in the rhizosphere soil of a constructed wetland
Author: Yaohui Bai, Jinsong Liang, Ruiping Liu, Chengzhi Hu & Jiuhui Qu
Journal: Environmental Technology
Year: 2014
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35)Title: Brazilian Microbiome Project: Revealing the Unexplored Microbial Diversity—Challenges and Prospects
Author: Marcos Rogério Tótola, Penny Ruth Hirsch, Alexandre Soares Rosado, Aristóteles Góes-Neto, Artur Luiz da Costa da Silva, Carlos Augusto Rosa, Daniel Kumazawa Morais, Fernando Dini Andreote, Gabriela Frois Duarte, Itamar Soares de Melo, Lucy Seldin, Márcio Rodrigues Lambais, Mariangela Hungria, Raquel Silva Peixoto, Ricardo Henrique Kruger, Siu Mui Tsai, Vasco Azevedo
Journal: Microbial Ecology
Year: 2014
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36)Title: Integration of bioinformatics to biodegradation
Author: Pankaj Kumar Arora, Hanhong Bae
Journal: Arora and Bae Biological Procedures
Year: 2014
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37)Title: Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial
Author: Nicolas Servant, Julien Roméjon, Pierre Gestraud, Philippe La Rosa, Georges Lucotte, Séverine Lair, Virginie Bernard, Bruno Zeitouni, Fanny Coffin, Gérôme Jules-Clément, Florent Yvon, Alban Lermine, Patrick Poullet, Stéphane Liva, Stuart Pook, Tatiana Popova, Camille Barette, François Prud’homme, Jean-Gabriel Dick, Maud Kamal,8 Christophe Le Tourneau, Emmanuel Barillot, Philippe Hupé
Journal: Front Genet
Year: 2014
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38)Title: Using Kepler for Tool Integration in Microarray Analysis Workflows
Author: Zhuohui Gan , Jennifer C. Stowe, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon
Journal: Procedia Computer Science
Year: 2014
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39)Title: RNA-Seq Analysis Pipeline Based on Oshell Environment
Author: Jing Li., Jun Hu, Newman, M., Kejun Liu
Journal: Computational Biology and Bioinformatics
Year: 2014
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40)Title: Coordination characterization of zinc metalloproteins
Author: Sen Yao, Robert M Flight, Hunter NB Moseley
Journal: BMC Bioinformatics
Year: 2014
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41)Title: Bioinfo-Kit: A Sharing Software Tool for Bioinformatics
Author: Yu Huang, Jian Yong Wang, Xiao Mei Wei, Bin Hu
Journal: Applied Mechanics and Materials
Year: 2014
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42)Title: Bioinformatics analysis of bacteriophage and prophage endolysin domains
Author: Barbora Vidová, Zuzana Šramková, Lenka Tišáková, Michaela Oravkinová, Andrej Godány
Journal: Concurrency and Computation: Practice and Experience
Year: 2014
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43)Title: Spectrophotometric Determination of Al(III) in Environment Water with p-Carboxyarsenazo
Author: Lin Gao, Bo Yan, Fang Chen, Jun Long Yao
Journal: Advanced Materials Research
Year: 2014
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44)Title: Physical, policy, and sociocultural characteristics of the primary school environment are positively associated with children's physical activity during class time
Author: Martin K, Bremner A, Salmon J, Rosenberg M, Giles-Corti B
Journal: Journal of Physical Activity & Health
Year: 2014
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_____________________________________________________________________________________________________________________
1)Title: Biofuels as a sustainable energy source: An update of the applications of proteomics in bioenergy crops and algae
Author: Bongani Kaiser Ndimba, Roya Janeen Ndimba, T. Sudhakar Johnson, Rungaroon Waditee-Sirisattha, Masato Baba, Sophon Sirisattha, Yoshihiro Shiraiwa, Ganesh Kumar Agrawal, Randeep Rakwal
Journal: Journal of Proteomics
Year: 2013
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2)Title: Bioinformatics tools for secretome analysis
Author: Dario Caccia, Matteo Dugo, Maurizio Callari, Italia Bongarzone
Journal: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
Year: 2013
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3)Title: Elucidating the fungal stress response by proteomics
Author: Kristin Kroll, Vera Pähtz, Olaf Kniemeyer
Journal: Journal of Proteomics
Year: 2013
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4)Title: Exploring the potential of applying proteomics for tracking bisphenol A and nonylphenol degradation in activated sludge
Author: Neus Collado, Gianluigi Buttiglieri, Boris A. Kolvenbach, Joaquim Comas, Philippe F.-X. Corvini, Ignasi Rodríguez-Roda
Journal: Chemosphere
Year: 2013
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5)Title: Genomics in marine monitoring: New opportunities for assessing marine health status
Author: Sarah J. Bourlat, , Angel Borja, Jack Gilbert, Martin I. Taylor, Neil Davies, Stephen B. Weisberg, John F. Griffith, Teresa Lettieri, Dawn Field, John Benzie, Frank Oliver Glöckner, Naiara Rodríguez-Ezpeleta, Daniel P. Faith, Tim P. Bean, Matthias Obst
Journal: Marine Pollution Bulletin
Year: 2013
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6)Title: Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems
Author: Carolin A. Kolmeder, Willem M. de Vos
Journal: Journal of Proteomics
Year: 2013
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7)Title: Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring
Author: Carolina Rubiano-Labrador, Céline Bland, Guylaine Miotello, Philippe Guérin, Olivier Pible, Sandra Baena, Jean Armengaud
Journal: Journal of Proteomics
Year: 2013
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8)Title: Proteomic analysis of mycelium and secretome of differentBotrytis cinerea wild-type strains
Author: Raquel González-Fernández, Kerman Aloria, José Valero-Galván, Inmaculada Redondo, Jesús M Arizmendi, Jesús V. Jorrín-Novo
Journal: Journal of Proteomics
Year: 2013
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9)Title: Proteomics and bioinformatics analysis reveal underlying pathways of infection associated histologic chorioamnionitis in pPROM
Author: V. Tambor, M. Kacerovsky, J. Lenco, G. Bhat, R. Menon
Journal: Placenta
Year: 2013
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10)Title: Proteomics approaches for the analysis of enriched microbial subpopulations and visualization of complex functional information
Author: Jörg Bernhardt, Stephan Michalik, Bernd Wollscheid, Uwe Völker, Frank Schmidt
Journal: Current Opinion in Biotechnology
Year: 2013
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11)Title: Quantitative proteomics reveals dynamic responses ofSynechocystis sp. PCC 6803 to next-generation biofuel butanol
Author: Xiaoxu Tian, Lei Chen, Jiangxin Wang, Jianjun Qiao, Weiwen Zhang
Journal: Journal of Proteomics
Year: 2013
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12)Title: Searching for microbial protein over-expression in a complex matrix using automated high throughput MS-based proteomics tools
Author: Michiel Akeroyd, Maurien Olsthoorn, Jort Gerritsma, Diana Gutker-Vermaas, Laurens Ekkelkamp, Tjeerd van Rij, Paul Klaassen, Wim Plugge, Ed Smit, Kerstin Strupat, Thibaut Wenzel, Marcel van Tilborg, Rob van der Hoeven
Journal: Journal of Biotechnology
Year: 2013
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13)Title: Subpopulation-proteomics in prokaryotic populations
Author: Michael Jahn, Jana Seifert, Martin von Bergen, Andreas Schmid, Bruno Bühler, Susann Müller
Journal: Current Opinion in Biotechnology
Year: 2013
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14)Title: The characterisation of eukaryotic microbial communities on sandstone buildings in Belfast, UK, using TRFLP and 454 pyrosequencing
Author: Nick A. Cutler, Anna E. Oliver, Heather A. Viles, Samin Ahmad, Andrew S. Whiteley
Journal: International Biodeterioration & Biodegradation
Year: 2013
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15)Title: Which metaproteome? The impact of protein extraction bias on metaproteomic analyses
Author: Dagmar Hajkova Leary, W. Judson Hervey IV, Jeffrey R. Deschamps, Anne W. Kusterbeck, Gary J. Vora
Journal: Molecular and Cellular Probes
Year: 2013
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____________________________________________________________________________________________________________________
1)Title: Analysis and Prediction of Protein Interaction Network of Ralstonia solanacearum
Author: JIANG Chunlei; ZHAO rui; Lü Lingfeng; QIAO Dairong; CAO Yi
Journal: Chinese Journal of Applied and Environmental Biology
Year: 2012
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2)Title: Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
Author: Susanne Schmitt, Peter Tsai, James Bell, Jane Fromont, Micha Ilan, Niels Lindquist, Thierry Perez, Allen Rodrigo, Peter J Schupp, Jean Vacelet, Nicole Webster, Ute Hentschel and Michael W Taylor
Journal: The ISME Journal
Year: 2012
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3)Title: Bacterial transcription: Transcription factor sliding in live bacteria
Author: Christina Tobin Kåhrström
Journal: Nature Reviews Microbiology
Year: 2012
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4)Title: Bioinformatics analysis of bacterial protective antigens in manually curated Protegen database
Author: Yongqun He, Zuoshuang Xiang
Journal: Procedia in Vaccinology
Year: 2012
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5)Title: BioNLP Shared Task - The Bacteria Track
Author: Robert Bossy, Julien Jourde, Alain-Pierre Manine, Philippe Veber, Erick Alphonse, Maarten van de Guchte, Philippe Bessières and Claire Nédellec
Journal: BMC Bioinformatics
Year: 2012
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6)Title: Conversion of viable but nonculturable enteric bacteria to culturable by co-culture with eukaryotic cells
Author: Mitsutoshi Senoh, Jayeeta Ghosh-Banerjee, Thandavarayan Ramamurthy, Rita R. Colwell, Shin-ichi Miyoshi, G. Balakrish Nair, Yoshifumi Takeda
Journal: Microbiology and Immunology
Year: 2012
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7)Title: De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
Author: Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE
Journal: ISME J.
Year: 2012
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8)Title: Diversity of organism in the Usnea longissima lichen
Author: Yunzhe He and Zhiguo Zhang
Journal: African Journal of Microbiology Research
Year: 2012
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9)Title: Diversity, distribution and sources of bacteria in residential kitchens
Author: Gilberto E. Flores, Scott T. Bates, J. Gregory Caporaso, Christian L. Lauber, Jonathan W. Leff, Rob Knight, Noah Fierer
Journal: Environmental Microbiology
Year: 2012
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10)Title: Endosymbiotic bacteria as a source of carotenoids in whiteflies
Author: Daniel B. Sloan and Nancy A. Moran
Journal: Biology Letters
Year: 2012
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11)Title: Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants
Author: Maria Cecilia Arias, Étienne G.J. Danchin, Pedro Coutinho, Bernard Henrissat and Steven Ball
Journal: Mobile Genetic Elements Landes Bioscience
Year: 2012
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12)Title: Expression and Bioinformatics Analysis of Pectate Lyase Gene from Bacillus subtilis521
Author: Jing Xiao, Fu-Ping Lu, Yu Li, Jin-Ting Li
Journal: Physics Procedia
Year: 2012
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13)Title: Fungi and Their Role in Corals and Coral Reef Ecosystems
Author: Chandralata Raghukumar, J. Ravindran
Journal: Progress in Molecular and Subcellular Biology
Year: 2012
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14)Title: Hematodinium sp. and its bacteria-like endosymbiont in European brown shrimp(Crangon crangon)
Author: Grant D Stentiford, Kelly S Bateman, Hamish J Small, Michelle Pond and Anette Ungfors
Journal: Stentiford et al. Aquatic Biosystems
Year: 2012
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15)Title: Horizontal Gene Transfer Between Sclerotinia sclerotiorum and Bacteria
Author: Lü Linfeng; YUE Jianyu; FEI Zhong’an; ZHAO Rui; QIAO Dairong; CAO Yi
Journal: Chinese Journal of Applied and Environmental Biology
Year: 2012
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16)Title: ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
Author: Dexi Bi, Zhen Xu, Ewan M. Harrison, Cui Tai, Yiqing Wei, Xinyi He, Shiru Jia, Zixin Deng, Kumar Rajakumar and Hong-Yu Ou
Journal: Nucleic Acids Research
Year: 2012
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17)Title: Interfacing medicinal chemistry with structural bioinformatics: implications for T box riboswitch RNA drug discovery
Author: Franziska Jentzsch and Jennifer V Hines
Journal: BMC Bioinformatics
Year: 2012
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18)Title: MALDI TOF MS profiling of bacteria at the strain level: A review
Author: Todd R. Sandrin, Jason E. Goldstein, Stephanie Schumaker
Journal: Mass Spectrometry Reviews
Year: 2012
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19)Title: MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures
Author: Bille E, Dauphin B, Leto J, Bougnoux ME, Beretti JL, Lotz A, Suarez S, Meyer J, Join-Lambert O, Descamps P, Grall N, Mory F, Dubreuil L, Berche P, Nassif X, Ferroni A
Journal: Clinical Microbiology and Infection
Year: 2012
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20)Title: Nonculture-based identification of bacteria in milk by protein fingerprinting
Author: Juliana Regina Barreiro, Patricia Aparecida Campos Braga, Christina Ramires Ferreira, Markus Kostrzewa, Thomas Maier, Beatrix Wegemann, Viktoria Böettcher, Marcos N. Eberlin, Marcos Veiga dos Santos
Journal: PROTEOMICS
Year: 2012
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21)Title: On the trail of EHEC/EAEC—unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria
Author: Josch Pauling, Richard Röttger, Andreas Neuner, Heladia Salgado, Julio Collado-Vides, Prabhav Kalaghatgi, Vasco Azevedo, Andreas Tauch, Alfred Pühler and Jan Baumbach
Journal: Integrative Biology
Year: 2012
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22)Title: Patho-Genes.org: a website dedicated to gene sequences of potential bioterror bacteria and PCR primers used to amplify them
Author: Julien Gardès, Dipankar Bachar, Olivier Croce, Richard Christen
Journal: Microbial Biotechnology
Year: 2012
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23)Title: Phylogenomics of Prokaryotic Ribosomal Proteins
Author: Natalya Yutin, Pere Puigbò, Eugene V. Koonin, Yuri I. Wolf
Journal: PLoS ONE
Year: 2012
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24)Title: Population Genomics of Early Events in the Ecological Differentiation of Bacteria
Author: B. Jesse Shapiro, Jonathan Friedman, Otto X. Cordero, Sarah P. Preheim, Sonia C. Timberlake, Gitta Szabó, Martin F. Polz, Eric J. Alm
Journal: Science
Year: 2012
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25)Title: Potential Key Bases of Ribosomal RNA to Kingdom-Specific Spectra of Antibiotic Susceptibility and the Possible Archaeal Origin of Eukaryotes
Author: Qiang Xie, Yanhui Wang, Jinzhong Lin, Yan Qin, Ying Wang, Wenjun Bu
Journal: PLoS ONE
Year: 2012
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26)Title: Predicting sRNAs and Their Targets in Bacteria
Author: Wuju Li, Xiaomin Ying, Qixuan Lu, Linxi Chen
Journal: Genomics, Proteomics and Bioinformatics
Year: 2012
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27)Title: RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
Author: Pavel S. Novichkov, Thomas S. Brettin, Elena S. Novichkova, Paramvir S. Dehal, Adam P. Arkin, Inna Dubchak and Dmitry A. Rodionov
Journal: Nucleic Acids Research
Year: 2012
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28)Title: sRNAdb: A small non-coding RNA database for gram-positive bacteria
Author: Jordan Pischimarov, Carsten Kuenne, André Billion, Jüergen Hemberger, Franz Cemic, Trinad Chakraborty and Torsten Hain
Journal: BMC Genomics
Year: 2012
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29)Title: Subcellular Localization of Extracytoplasmic Proteins in Monoderm Bacteria: Rational Secretomics-Based Strategy for Genomic and Proteomic Analyses
Author: Sandra Renier, Pierre Micheau, Régine Talon, Michel Hébraud, Mickaël Desvaux
Journal: PLoS ONE
Year: 2012
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30)Title: Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities
Author: Hikaru Suenaga
Journal: Environmental Microbiology
Year: 2012
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31)Title: Taxonomy of lice and their endosymbiotic bacteria in the post-genomic era
Author: B. M. Boyd, D. L. Reed
Journal: Clinical Microbiology and Infection
Year: 2012
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32)Title: The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
Author: Kevin J. Forsberg, Alejandro Reyes, Bin Wang, Elizabeth M. Selleck, Morten O. A. Sommer, Gautam Dantas
Journal: Science
Year: 2012
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33)Title: Virus genes in Arctic marine bacteria identified by metagenomic analysis
Author: Matthew T. Cottrell, David L. Kirchman
Journal: AQUATIC MICROBIAL ECOLOGY
Year: 2012
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________________________________________________________________________________________________________________
1)Title: A NOVEL ANTIBACTERIAL TARGET: PEPTIDE DEFORMYLASE
Author: Sanjay Kumar Verma, R.K. Jat, Narendra Nagar, Rajkumar Saharan, Vineet Sharma, Sanjay pandey, Kuldeep bansal
Journal: Pharmacophore
Year: 2011
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2)Title: An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales
Author: Le Fourn C, Brasseur G, Brochier-Armanet C, Pieulle L, Brioukhanov A, Ollivier B, Dolla A.
Journal: Environ Microbiol.
Year: 2011
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3)Title: Comparative bioinformatics analysis of the mammalian and bacterial glycomes
Author: Alexander Adibekian , Pierre Stallforth , Marie-Lyn Hecht , Daniel B. Werz , Pascal Gagneux and Peter H. Seeberger
Journal: Chemical Science
Year: 2011
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4)Title: Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems
Author: Simon Roux, François Enault, Gisè le Bronner, Didier Debroas
Journal: FEMS Microbiology Ecology
Year: 2011
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5)Title: Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria
Author: Jennifer Luciano, Rym Agrebi, Anne Valérie Le Gall, Morgane Wartel, Francesca Fiegna, Adrien Ducret, Céline Brochier-Armanet, Tâm Mignot
Journal: PLoS Genet
Year: 2011
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6)Title: Genetic diversity of antagonistic endophytic bacteria isolated from Sophora alopecuroide
Author: Lin TianXing; Li Chao; Gong MingFu
Journal: Plant Diseases and Pests
Year: 2011
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7)Title: Genome mining for the discovery of new nitrilases in filamentous fungi
Author: Ondrej Kaplan, Karel Bezouška, Anna Malandra, Alicja B. Veselá, Alena Petrícková, Jürgen Felsberg, Anna Rinágelová, Vladimír Kren, Ludmila Martínková
Journal: Biotechnology Letters
Year: 2011
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8)Title: Genome Sequences of the High-Acetic Acid-Resistant Bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (Reference Strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (Isolated from Vinegar)
Author: Cristina Andrés-Barrao, Laurent Falquet, Sandra P. Calderon-Copete, Patrick Descombes, Ruben Ortega Pérez and François Barja
Journal: Journal of Bacteriology
Year: 2011
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9)Title: Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota
Author: Amir Kovacs, Noa Ben-Jacob, Hanna Tayem, Eran Halperin, Fuad A. Iraqi, Uri Gophna
Journal: Microbial Ecology
Year: 2011
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10)Title: Hidden Fungi, Emergent Properties: Endophytes and Microbiomes
Author: Andrea Porras-Alfaro and Paul Bayman
Journal: Annual Review of Phytopathology
Year: 2011
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11)Title: Membrane RNAs in bacteria
Author: Wes Sanders, Alain Laederach
Journal: Molecular Microbiology
Year: 2011
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12)Title: Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria
Author: Yoshiharu Sato, Akiko Takaya and Tomoko Yamamoto
Journal: BMC Bioinformatics
Year: 2011
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13)Title: Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways
Author: Amouric A, Brochier-Armanet C, Johnson DB, Bonnefoy V, Hallberg KB
Journal: Microbiology
Year: 2011
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14)Title: Regulation of chitinase genes expression in bacteria
Author: Xie CC, Jia HY, Chen YH
Journal: Yi Chuan.
Year: 2011
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15)Title: Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases
Author: Auxilien S, Rasmussen A, Rose S, Brochier-Armanet C, Husson C, Fourmy D, Grosjean H, Douthwaite S
Journal: RNA
Year: 2011
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16)Title: Structure of Hydrogenase in Biohydrogen Production Anaerobic Bacteria
Author: Ming Du, Lu Zhang
Journal: Interdisciplinary Research and Applications in Bioinformatics
Year: 2011
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17)Title: TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea
Author: Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar and Zixin Deng
Journal: Nucleic Acids Research
Year: 2011
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18)Title: The GTPase function of YvcJ and its subcellular relocalization are dependent on growth conditions in Bacillus subtilis
Author: Pompeo F, Luciano J, Brochier-Armanet C, Galinier A
Journal: J Mol Microbiol Biotechnol
Year: 2011
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19)Title: The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases
Author: Helena Tlaskalová-Hogenová, Renata Štepánková, Hana Kozáková, Tomáš Hudcovic, Luca Vannucci, Ludmila Tucková, Pavel Rossmann, Tomáš Hrncír, Miloslav Kverka, Zuzana Zákostelská, Klára Klimešová, Jaroslava Pribylová, Jirina Bártová, Daniel Sanchez, Petra Fundová, Dana Borovská, Dagmar Šrutková, Zdenek Zídek, Martin Schwarzer, Pavel Drastich and David P Funda
Journal: Cellular and Molecular Immunology
Year: 2011
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____________________________________________________________________________________________________________
1)Title: 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
Author: Leho Tedersoo, R. Henrik Nilsson, Kessy Abarenkov, Teele Jairus, Ave Sadam, Irja Saar, Mohammad Bahram, Eneke Bechem, George Chuyong, Urmas Kõljalg
Journal: New Phytologist
Year: 2010
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2)Title: A constructive step towards selecting a DNA barcode for fungi
Author: Ursula Eberhardt
Journal: New Phytologist
Year: 2010
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3)Title: An automatic method for identifying surface proteins in bacteria: SLEP
Author: Emanuela Giombini, Massimiliano Orsini, Danilo Carrabino and Anna Tramontano
Journal: BMC Bioinformatics
Year: 2010
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4)Title: An open source chimera checker for the fungal ITS region
Author: R. H. NILSSON, KESSY ABARENKOV, VILMAR VELDRE, STEPHAN NYLINDER, PIERRE DE WIT, SARA BROSCHÉ, JOHAN F. ALFREDSSON, MARTIN RYBERG, ERIK KRISTIANSSON
Journal: Molecular Ecology Resources
Year: 2010
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5)Title: Bioinformatics Computing of Parametric Information Connected with Industrially Important Bacteria
Author: Sant Saran Mishra
Journal: Int. J. Open Problems Compt. Math.
Year: 2010
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6)Title: Characterization and etiology of the bacteria associated with huanglongbing
Author: Teixeira, D. do C.; Wulff, N. A.; Lopes, S. A.; Yamamoto, P. T.; Miranda, M. P. de; Spósito, M. B.; Belasque Júnior, J.; Bassanezi, R. B.
Journal: Citrus Research and Technology
Year: 2010
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7)Title: Characterization and Phylogenetics of a New Species of High Efficient Biohydrogen Production Anaerobic Bacterium
Author: Kun Liu, Yong Feng Li, An Ying Jiao, Xin Yu Pan
Journal: Advanced Materials Research
Year: 2010
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8)Title: Cohorts of arbuscular mycorrhizal fungi (AMF) in Vitis vinifera, a typical Mediterranean fruit crop
Author: Raffaella Balestrini, Franco Magurno, Christopher Walker, Erica Lumini, Valeria Bianciotto
Journal: Environmental Microbiology Reports
Year: 2010
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9)Title: Community dynamics and phylogenetics of bacteria fouling Jet A and JP-8 aviation fuel
Author: L.M. Brown, J.P. McComb, M.D. Vangsness, L.L. Bowen, S.S. Mueller, L.M. Balster, C.A. Bleckmann
Journal: International Biodeterioration and Biodegradation
Year: 2010
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10)Title: Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Author: Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy,Ronald R Breaker
Journal: Genome Biology
Year: 2010
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11)Title: Comparative systems biology: from bacteria to man
Author: Bas Teusink, Hans V. Westerhoff, Frank J. Bruggeman
Journal: Systems Biology and Medicine
Year: 2010
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12)Title: Computational prediction of type III secreted proteins from gram-negative bacteria
Author: Yang Yang, Jiayuan Zhao, Robyn L Morgan, Wenbo Ma and Tao Jiang
Journal: BMC Bioinformatics
Year: 2010
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13)Title: Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
Author: Petra Louis, Pauline Young, Grietje Holtrop, Harry J. Flint
Journal: Environmental Microbiology
Year: 2010
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14)Title: Drug discovery from uncultivable microorganisms
Author: Brajesh K. Singh, Catriona A. Macdonald
Journal: Drug Discovery Today
Year: 2010
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15)Title: Faecal indicator bacteria in river biofilms
Author: Balzer M, Witt N, Flemming HC, Wingender J
Journal: Water Science and Technology
Year: 2010
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16)Title: Fluorescence in situ hybridization for molecular cytogenetic analysis in filamentous fungi
Author: Tsuchiya D, Taga M
Journal: Methods in Molecular Biology
Year: 2010
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17)Title: Gene Cloning and Bioinformatics Analysis of Outer Capsid Protein VP7 gene for Giant Panda Rotavirus CH-1 Strain
Author: YAN Qi-gui, LEI Yan, ZHANG Zhi-he, WANG Cheng-dong, YANG Ai-guo, WANG Xu, ZUO Lan, XIAO Yang
Journal: Chinese Journal of Animal and Veterinary Sciences
Year: 2010
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18)Title: Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism
Author: Pietro D. Spanu, James C. Abbott, Joelle Amselem, Timothy A. Burgis, Darren M. Soanes, Kurt Stüber, Emiel Ver Loren van Themaat, James K. M. Brown, Sarah A. Butcher, Sarah J. Gurr, Marc-Henri Lebrun, Christopher J. Ridout, Paul Schulze-Lefert, Nicholas J. Talbot, Nahal Ahmadinejad, Christian Ametz, Geraint R. Barton, Mariam Benjdia, Przemyslaw Bidzinski, Laurence V. Bindschedler, Maike Both, Marin T. Brewer, Lance Cadle-Davidson, Molly M. Cadle-Davidson, Jerome Collemare, Rainer Cramer, Omer Frenkel, Dale Godfrey, James Harriman, Claire Hoede, Brian C. King, Sven Klages, Jochen Kleemann, Daniela Knoll, Prasanna S. Koti, Jonathan Kreplak, Francisco J. López-Ruiz, Xunli Lu, Takaki Maekawa, Siraprapa Mahanil, Cristina Micali, Michael G. Milgroom, Giovanni Montana, Sandra Noir, Richard J. O’Connell, Simone Oberhaensli, Francis Parlange, Carsten Pedersen, Hadi Quesneville, Richard Reinhardt, Matthias Rott, Soledad Sacristán, Sarah M. Schmidt, Moritz Schön, Pari Skamnioti, Hans Sommer, Amber Stephens, Hiroyuki Takahara, Hans Thordal-Christensen, Marielle Vigouroux, Ralf Weßling, Thomas Wicker, Ralph Panstruga
Journal: Science
Year: 2010
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19)Title: Genome mining of mycosporine-like amino acid (MAA) synthesizing and non-synthesizing cyanobacteria: A bioinformatics study
Author: Shailendra P. Singh, Manfred Klisch, Rajeshwar P. Sinha, Donat-P. Häder
Journal: Genomics
Year: 2010
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20)Title: Identifying and Quantifying Orphan Protein Sequences in Fungi
Author: Diana Ekman, Arne Elofsson
Journal: Journal of Molecular Biology
Year: 2010
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21)Title: Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences
Author: Xavier Didelot, Daniel Lawson, Aaron Darling and Daniel Falush
Journal: Genetics December
Year: 2010
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22)Title: Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria
Author: Katarzyna H. Kaminska, Elzbieta Purta, Lykke H. Hansen, Janusz M. Bujnicki, Birte Vester and Katherine S. Long
Journal: Nucleic Acids Research
Year: 2010
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23)Title: Intra-isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome
Author: E. BOON, E. ZIMMERMAN, B. F. LANG, M. HIJRI
Journal: Journal of Evolutionary Biology
Year: 2010
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24)Title: ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
Author: Eva Bellemain, Tor Carlsen, Christian Brochmann, Eric Coissac, Pierre Taberlet and Håvard Kauserud
Journal: BMC Bioinformatics
Year: 2010
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25)Title: Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
Author: Juan Pablo Cárdenas, Jorge Valdés, Raquel Quatrini, Francisco Duarte, David S. Holmes
Journal: Applied Microbiology and Biotechnology
Year: 2010
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26)Title: MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
Author: Thomas Weniger, Justina Krawczyk, Philip Supply, Stefan Niemann and Dag Harmsen
Journal: Nucleic Acids Research
Year: 2010
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27)Title: Molecular diversity of arbuscular mycorrhizal fungi and their distribution patterns related to host-plants and habitats in a hot and arid ecosystem, southwest China
Author: Ling-Fei Li, Tao Li, Yan Zhang, Zhi-Wei Zhao
Journal: FEMS Microbiology Ecology
Year: 2010
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28)Title: Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
Author: Jason C. Slot and Antonis Rokas
Journal: Proceedings of the National Academy of Sciences
Year: 2010
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29)Title: Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
Author: Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA
Journal: Proc Natl Acad Sci U S A
Year: 2010
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30)Title: Novel approaches for analysing gut microbes and dietary polyphenols: challenges and opportunities
Author: R. A. Kemperman, S. Bolca, L. C. Roger and E. E. Vaughan
Journal: Microbiology
Year: 2010
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31)Title: Palaeophylogenomics of the Vertebrate Ancestor—Impact of Hidden Paralogy on Hagfish and Lamprey Gene Phylogeny
Author: Shigehiro Kuraku
Journal: Integr. Comp. Biol.
Year: 2010
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32)Title: Pectolytic bacteria associated with soft rot of dieffenbachia (Dieffenbachia maculata)
Author: Mikicin´ski, A.; Pulawska, J.; Sobiczewski, P.; Orlikowski, L. B.
Journal: Phytopathologia
Year: 2010
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33)Title: Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)
Author: PATRICIA JARGEAT, FLORENT MARTOS, FABIAN CARRICONDE, HERVÉ GRYTA, PIERRE-ARTHUR MOREAU, MONIQUE GARDES
Journal: Molecular Ecology
Year: 2010
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34)Title: Proteomics, Genomics, and Pathway Analyses of Escherichia coli and Staphylococcus aureus Infected Milk Whey Reveal Molecular Pathways and Networks Involved in Mastitis
Author: Eveline M. Ibeagha-Awemu, Aloysius E. Ibeagha, Serge Messier and Xin Zhao
Journal: J. Proteome Res.
Year: 2010
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35)Title: Recent progress and new challenges in metagenomics for biotechnology
Author: Ludmila Chistoserdova
Journal: Biotechnology Letters
Year: 2010
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36)Title: Structure, function, and evolution of the Thiomonas spp. genome
Author: Arsène-Ploetze F, Koechler S, Marchal M, Coppée JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN.
Journal: PLoS Genet.
Year: 2010
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37)Title: The ecological coherence of high bacterial taxonomic ranks
Author: Laurent Philippot, Siv G. E. Andersson, Tom J. Battin, James I. Prosser, Joshua P. Schimel, William B. Whitman and Sara Hallin
Journal: Nature Reviews Microbiology
Year: 2010
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38)Title: The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
Author: Amanda J. Redford, Robert M. Bowers, Rob Knight, Yan Linhart, Noah Fierer
Journal: Environmental Microbiology
Year: 2010
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39)Title: The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes
Author: Maria Naumann, Arthur SchuBler and Paola Bonfante
Journal: The ISME Journal
Year: 2010
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40)Title: The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
Author: M. Öpik, A. Vanatoa, E. Vanatoa, M. Moora, J. Davison, J. M. Kalwij, Ü. Reier, M. Zobel
Journal: New Phytologist
Year: 2010
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41)Title: When metagenomics meets stable-isotope probing: progress and perspectives
Author: Yin Chen, J. Colin Murrell
Journal: Trends in Microbiology
Year: 2010
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42)Title: Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach
Author: SUN JianDong, XU Zhao & HAO BaiLin
Journal: Chinese Science Bulletin
Year: 2010
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43)Title: Zinc proteomes, phylogenetics and evolution
Author: Leonardo Decaria , Ivano Bertini and Robert J. P. Williams
Journal: Metallomics
Year: 2010
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