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Taxonomy

 

Taxonomy refers to the description, identification, naming (nomenclature) and grouping of organisms in a scientifically ordered manner that indicates natural relationships among the group of organisms.

 

 

1)Title: “A literature review on the levels of automation during the years. What are the different taxonomies that have been proposed?
Author: Marialena Vagia, Aksel A. Transeth, Sigurd A. Fjerdingen
Journal: Applied Ergonomics
Year: 2016
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2)Title: “A revised taxonomy of Gerbera sect. Gerbera (Asteraceae: Mutisieae)
Author: J.C. Manning, B. Simka, J.S. Boatwright, A.R. Magee
Journal: South African Journal of Botany
Year: 2016
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3)Title: “Exploring occurrence and molecular diversity of betaine lipids across taxonomy of marine microalgae
Author: José Pedro Cañavate, Isabel Armada, José Luis Ríos, Ismael Hachero-Cruzado
Journal: Phytochemistry
Year: 2016
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4)Title: “Molecular taxonomy of scopulariopsis-like fungi with description of new clinical and environmental species
Author: Tomasz Jagielski, Marcelo Sandoval-Denis, Jin Yu, Limin Yao, Zofia Bakula, Joanna Kalita, Magdalena Skóra, Pawel Krzysciak, G. Sybren de Hoog, Josep Guarro, Josepa Gené
Journal: Fungal Biology
Year: 2016
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5)Title: “Testing the pedometric evaluation of taxonomic units on soil taxonomy — A step in advancing towards a universal soil classification system
Author: Erika Michéli, Vince Láng, Phillip R. Owens, Alex McBratney, Jon Hempel
Journal: Geoderma
Year: 2016
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6)Title: “The effect of feedstock composition and taxonomy on the products distribution from pyrolysis of nine herbaceous plants
Author: Adéla Hlavsová, Agnieszka Corsaro, Helena Raclavská, Silvie Vallová, Dagmar Juchelková
Journal: Fuel Processing Technology
Year: 2016
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7)Title: “The taxonomy of the European species of Hebeloma section Denudata subsections Hiemalia, Echinospora subsect. nov. and Clepsydroida subsect. nov. and five new species
Author: Ursula Eberhardt, Henry J. Beker, Jan Vesterholt, Nicole Schütz
Journal: Fungal Biology
Year: 2016
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8)Title: “Multilocus resolution of Mugilidae phylogeny (Teleostei: Mugiliformes): Implications for the family’s taxonomy
Author: Ursula Eberhardt, Henry J. Beker, Jan Vesterholt, Nicole Schütz
Journal: Molecular Phylogenetics and Evolution
Year: 2016
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9)Title: “Evolution and taxonomy of native mesorhizobia nodulating medicinal Glycyrrhiza species in China
Author: Seyed Abdollah Mousavi, Li Li, Gehong Wei, Leena Räsänen, Kristina Lindström
Journal: Systematic and Applied Microbiology
Year: 2016
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10)Title: “Molecular phylogeny and taxonomy of Lagenidium-like oomycetes pathogenic to mammals
Author: Christoffel F.J. Spies, Amy M. Grooters, C. André Lévesque, Tara L. Rintoul, Scott A. Redhead, Sally L. Glockling, Chi-yu Chen, Arthur W.A.M. de Cock
Journal: Fungal Biology
Year: 2016
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11)Title: “Taxonomy of factors which influence heavy metal build-up on urban road surfaces
Author: An Liu, Chandima Gunawardana, Janaka Gunawardena, Prasanna Egodawatta, Godwin A. Ayoko, Ashantha Goonetilleke
Journal: Journal of Hazardous Materials
Year: 2016
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12)Title: “Taxonomy and phylogeny of Laburnicola gen. nov. and Paramassariosphaeria gen. nov. (Didymosphaeriaceae, Massarineae, Pleosporales)
Author: Dhanushka N. Wanasinghe, E.B. Gareth Jones, Erio Camporesi, Asha J. Dissanayake, Sutakorn Kamolhan, Peter E. Mortimer, Jianchu Xu, Kamel A. Elsalam, Kevin D. Hyde
Journal: Fungal Biology
Year: 2016
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13)Title: Developing the FARSEEING Taxonomy of Technologies: Classification and description of technology use (including ICT) in falls prevention studies
Author: Elisabeth Boulton, Helen Hawley-Hague, Beatrix Vereijken, Amanda Clifford, Nick Guldemond, Klaus Pfeiffer, Alex Hall, Federico Chesani, Sabato Mellone, Alan Bourke, Chris Todd
Journal: Journal of Biomedical Informatics
Year: 2016
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14)Title: Predicting the diet of coastal fishes at a continental scale based on taxonomy and body size
Author: German A. Soler, Graham J. Edgar, Rick D. Stuart-Smith, Anthony D.M. Smith, Russell J. Thomson
Journal: Journal of Experimental Marine Biology and Ecology
Year: 2016
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15)Title: Vegetal extracts influence in vitro on the cell-mediated immunity in carnivores depending on health status, target species and plant taxonomy
Author: Marina Spînu, Mihaela Niculae, Anamaria Ioana Pastiu, Carmen Dana Sandru, Emoke Pall, A. Vasiu
Journal: Industrial Crops and Products
Year: 2016
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16)Title: Generalization of parse trees for iterative taxonomy learning
Author: Boris A. Galitsky
Journal: Information Sciences
Year: 2016
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17)Title: Taxonomy, biogeography and importance of Heterobasidion viruses
Author: Eeva J. Vainio, Jarkko Hantula
Journal: Virus Research
Year: 2016
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18)Title: Classification of human errors in grounding and collision accidents using the TRACEr taxonomy
Author: A. Graziano, A.P. Teixeira, C. Guedes Soares
Journal: Safety Science
Year: 2016
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19)Title: An exploratory study of UK companies' taxonomy based on environmental drivers
Author: Marta Ormazabal, Rogério Puga-Leal
Journal: Journal of Cleaner Production
Year: 2016
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20)Title: A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data
Author: Yucheng Zhang, Qiurong Fan, Rosemary Loria
Journal: Systematic and Applied Microbiology
Year: 2016
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21)Title: Taxonomy and phylogeny of dematiaceous coelomycetes
Author: Nalin N. Wijayawardene, Kevin D. Hyde, Dhanushka N. Wanasinghe, Moslem Papizadeh, Ishani D. Goonasekara, Erio CamporesiD. Jayarama Bhat, Eric H. C. McKenzie, Alan J. L. Phillips, Paul Diederich, Kazuaki Tanaka, Wen Jing Li, Narumon Tangthirasunun, Rungtiwa Phookamsak, Dong-Qin Dai
Journal: Fungal Diversity
Year: 2016
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22)Title: Genetic relatedness and taxonomy in closely related species of Hedysarum (Fabaceae)
Author: Natalia S. Zvyaginaa, Olga V. Doroginaa, Pilar Catalan
Journal: Biochemical Systematics and Ecology
Year: 2016
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23)Title: Solanum insanum L. (subgenus Leptostemonum Bitter, Solanaceae), the neglected wild progenitor of eggplant (S. melongena L.): a review of taxonomy, characteristics and uses aimed at its enhancement for improved eggplant breeding
Author: R. H. G. Ranil, J. Prohens, X. Aubriot, H. M. L. Niran, M. Plazas, R. M. Fonseka, S. Vilanova, H. H. Fonseka, P. Gramazio, S. Knapp
Journal: Genetic Resources and Crop Evolution
Year: 2016
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24)Title: Novel Endorna-like viruses, including three with two open reading frames, challenge the membership criteria and taxonomy of the Endornaviridae
Author: Jamie W.L. Ong, Hua Li, Krishnapillai Sivasithamparam, Kingsley W. Dixon, Michael G.K. Jones, Stephen J. Wylie
Journal: Virology
Year: 2016
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25)Title: Phylogeny and taxonomy of casebearer moths (Lepidoptera, Coleophoridae) based on morphological and molecular genetic data. 1. Reconstruction of phylogeny of coleophoridae using analysis of COI gene variability
Author: V. V. Anikin, A. G. Dyomin, M. A. Knushevitskaya
Journal: Entomological Review
Year: 2016
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26)Title: Molecular phylogeny of monoraphid diatoms and raphe significance in evolution and taxonomy
Author: M. S. Kulikovskiy, S. A. Andreeva, E. S. Gusev, I. V. Kuznetsova, N. V. Annenkova
Journal: Biology Bulletin
Year: 2016
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27)Title: A new species of the genus Medfracaulus from the Upper Carboniferous of the Moscow Basin; Morphology and taxonomy and the family Ptychocaulidae (Gastropoda)
Author: A. V. Mazaev
Journal: Paleontological Journal
Year: 2016
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28)Title: Turbo-taxonomy to assemble a megadiverse lichen genus: seventy new species of Cora (Basidiomycota: Agaricales: Hygrophoraceae), honouring David Leslie Hawksworth’s seventieth birthday
Author: Robert Lücking, Manuela Dal Forno, Bibiana Moncada, Luis Fernando Coca, Leidy Yasmín Vargas-Mendoza, André Aptroot, Laura Juliana Arias, Betty Besal, Frank Bungartz, Diego Mauricio Cabrera-Amaya, Marcela E. S. Cáceres, José Luis Chaves, Sionara Eliasaro, Martha Cecilia Gutiérrez, Jesús E. Hernández Marin
Journal: Fungal Diversity
Year: 2016
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29)Title: ClassyFire: automated chemical classification with a comprehensive, computable taxonomy
Author: Yannick Djoumbou Feunang, Roman Eisner, Craig Knox, Leonid Chepelev, Janna Hastings, Gareth Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart
Journal: Journal of Cheminformatics
Year: 2016
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30)Title: Taxonomy and multi-gene phylogeny of Haploporus (Polyporales, Basidiomycota)
Author: Lu-Lu Shen, Jia-Jia Chen, Min Wang, Bao-Kai Cui
Journal: Mycological Progress
Year: 2016
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31)Title: Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy
Author: Lu-Lu Shen, Jia-Jia Chen, Min Wang, Bao-Kai Cui
Journal: Hydrobiologia
Year: 2016
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32)Title: A Taxonomy to Classify Risk End-User Profile in Interaction with the Computing Environment
Author: Karla Susiane Pereira, Eduardo Feitosa, Tayana Conte
Journal: Human Aspects of Information Security, Privacy, and Trust
Year: 2016
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33)Title: Effects of taxonomy, sediment, and water column on C:N:P stoichiometry of submerged macrophytes in Yangtze floodplain shallow lakes, China
Author: Haojie SuYao Wu, Ping Xie, Jun Chen, Te Cao, Wulai Xia
Journal: Environmental Science and Pollution Research
Year: 2016
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34)Title: Melon Genetic Resources: Phenotypic Diversity and Horticultural Taxonomy
Author: Michel Pitrat
Journal: Plant Genetics and Genomics: Crops and Models
Year: 2016
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1)Title: Aptamers are an innovative and promising tool for phytoplankton taxonomy and biodiversity research
Author: Gianluca Santamaria, Carla Lucia Esposito, Laura Cerchia, Giovanna Benvenuto, Deepak Nanjappa, Diana Sarno, Adriana Zingone, Vittorio De Franciscis & Maurizio Ribera d'Alcalà
Journal: Chemistry and Ecology
Year: 2015
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2)Title: Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi
Author: Ivana Eichlerová, Ladislav Homolka, Lucia Žifcáková, Ludmila Lisá, Petra Dobiášová, Petr Baldrian
Journal: Fungal Ecology
Year: 2015
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3)Title: Identification of newly-isolated microorganisms containing valuable polyunsaturated fatty acids
Author: Yana Tsurkan, Tatyana Karpenyuk, Irina Guschina, Saltanat Orazova, Alla Goncharova, Roza Beisembaeva
Journal: Journal of Biotech Research
Year: 2015
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4)Title: Isolation, identification and characterization of Staphylococcus epidermidis in human milk
Author: Evrim Gunes Altuntas
Journal: Food Science and Technology
Year: 2015
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5)Title: Meroterpenoids from Marine Microorganisms: Potential Scaffolds for New Chemotherapy Leads
Author: Nelson G. M. Gomes, Suradet Buttachon, Anake Kijjoa
Journal: Handbook of Anticancer Drugs from Marine Origin
Year: 2015
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6)Title: Microorganisms for the Production of Lactic Acid and Organic Lactates
Author: Christine Idler, Joachim Venus, Birgit Kamm
Journal: Microorganisms in Biorefineries
Year: 2015
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7)Title: On the way to identify microorganisms in drinking water distribution networks via DNA analysis of the gut content of freshwater isopods
Author: Michael Mayer, Adrian Keller, Ulrich Szewzyk, Hans-Joachim Warnecke
Journal: Journal of Biotechnology
Year: 2015
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8)Title: Phylogenetic analysis of microalgae based on highly abundant proteins using mass spectrometry
Author: Hae-Won Lee, Seong Woon Roh, Kichul Cho, Kil-Nam Kim, In-Tae Cha, Kyung June Yim, Hye Seon Song, Young-Do Nam, Tatsuya Oda, Young-Ho Chung, Soo Jung Kim, Jong-Soon Choi, Daekyung Kim
Journal: Talanta
Year: 2015
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9)Title: Taxonomy and phylogeny of the Leptographium procerum complex, including Leptographium sinense sp. nov. and Leptographium longiconidiophorum sp. nov
Author: Mingliang Yin, Tuan A. Duong, Michael J. Wingfield, XuDong Zhou, Z. Wilhelm de Beer
Journal: Antonie van Leeuwenhoek
Year: 2015
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10)Title: Taxonomy, chemodiversity, and chemoconsistency of Aspergillus, Penicillium, and Talaromyces species
Author: Jens C. Frisvad
Journal: Frontiers in Microbiology
Year: 2015
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11)Title: Thermophilic fungi in the new age of fungal taxonomy
Author: Tássio Brito de Oliveira, Eleni Gomes, Andre Rodrigues
Journal: Extremophiles
Year: 2015
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12)Title: A study on the taxonomy of soil amoebas from Caspian plague foci based on an analysis of ribosomal operon sequences
Author: E. I. Koshel’, L. V. Anisimova, L. A. Novichkova, N. A. Vidyaeva, N. P. Guseva, G. A. Eroshenko, V. V. Kutyrev
Journal: Russian Journal of Genetics
Year: 2015
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13)Title: Systematic and Evolution of Microorganisms: General Concepts
Author: Charles-François Boudouresque, Pierre Caumette, Jean-Claude Bertrand, Philippe Normand, Télesphore Sime-Ngando
Journal: Environmental Microbiology: Fundamentals and Applications
Year: 2015
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14)Title: Phylogenetic analysis of microalgae based on highly abundant proteins using mass spectrometry
Author: Hae-Won Lee, Seong Woon Roh, Kichul Cho, Kil-Nam Kim, In-Tae Cha, Kyung June Yim, Hye Seon Song, Young-Do Nam, Tatsuya Oda, Young-Ho Chung, Soo Jung Kim, Jong-Soon Choi, Daekyung Kim
Journal: Talanta
Year: 2015
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15)Title: Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
Author: Stefanie P. Glaeser, Peter Kämpfer
Journal: Systematic and Applied Microbiology
Year: 2015
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16)Title: The changing landscape of microbial biodiversity exploration and its implications for systematics
Author: Brian P. Hedlund, Jeremy A. Dodsworth, James T. Staley
Journal: Systematic and Applied Microbiology
Year: 2015
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17)Title: Microbial Resource Research Infrastructure (MIRRI): Infrastructure to foster academic research and biotechnological innovation
Author: Manuela Schüngel andErko Stackebrandt
Journal: Biotechnology Journal
Year: 2015
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18)Title: Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
Author: Masaki Shintani, Zoe K. Sanchez, and Kazuhide Kimbara
Journal: Frontiers in Microbiology
Year: 2015
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19)Title: Taxonomies of workflow scheduling problem and techniques in the cloud
Author: Sucha Smanchat, Kanchana Viriyapant
Journal: Future Generation Computer Systems
Year: 2015
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20)Title: From action icon to knowledge icon: Objective-oriented icon taxonomy in computer science
Author: Xiaoyue Ma, Nada Matta, Jean-Pierre Cahier, Chunxiu Qin, Yanjie Cheng
Journal: Displays
Year: 2015
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21)Title: Education for sustainability: Developing a taxonomy of the key principles for sustainable process and product design
Author: Jeffrey R. Seay
Journal: Computers & Chemical Engineering
Year: 2015
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22)Title: Taxonomy of USA east coast fishing communities in terms of social vulnerability and resilience
Author: Richard B. Pollnac, Tarsila Seara Lisa L. Colburn, Michael Jepson
Journal: Environmental Impact Assessment Review
Year: 2015
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23)Title: New Microbes New Infections promotes modern prokaryotic taxonomy: a new section “TaxonoGenomics: new genomes of microorganisms in humans”
Author: Pierre-Edouard Fournier, Michel Drancourt
Journal: New Microbes and New Infections
Year: 2015
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24)Title: Proteomic and high-throughput analysis of protein expression and microbial diversity of microbes from 30- and 300-year pit muds of Chinese Luzhou-flavor liquor
Author: Qi Zheng, Bairong Lin, Yibin Wang, Qiuping Zhang, Xinxin He, Ping Yang, Jun Zhoub, Xiong Guan, Xiaohong Huang
Journal: Food Research International
Year: 2015
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25)Title: Insight and analysis problem solving in microbes to machines
Author: Kevin B. Clark
Journal: Progress in Biophysics and Molecular Biology
Year: 2015
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26)Title: Controlled One-on-One Encounters between Immune Cells and Microbes Reveal Mechanisms of Phagocytosis
Author: Volkmar Heinrich
Journal: Biophysical Journal
Year: 2015
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27)Title: The combined effects of cover crops and symbiotic microbes on phosphatase gene and organic phosphorus hydrolysis in subtropical orchard soils
Author: Hang Cui, Yang Zhou, Zhenhong Gu, Honghui Zhu, Shenlei Fu, Qing Yao
Journal: Soil Biology and Biochemistry
Year: 2015
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28)Title: Examining the diversity of microbes in a deep-sea coral community impacted by the Deepwater Horizon oil spill
Author: R.L. Simister, E.W. Antzis, H.K. White
Journal: Deep Sea Research Part II: Topical Studies in Oceanography
Year: 2015
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29)Title: Regulating the respiration of microbe: A bio-inspired high performance microbial supercapacitor with graphene based electrodes and its kinetic features
Author: Hao Ren, He Tian, Hyung-Sool Lee, Taejin Park, Frederick C. Leung, Tian-Ling Ren, Junseok Chae
Journal: Nano Energy
Year: 2015
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30)Title: Elevated O3 and wheat cultivars influence the relative contribution of plant and microbe-derived carbohydrates to soil organic matter
Author: Caiyan Lu, Rui Fang, Qi Li, Yongzhuang Wang, Jianguo Zhu, Jian Maa, Xin Chen, Yi Shi
Journal: Applied Soil Ecology
Year: 2015
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31)Title: Pseudorhizobium pelagicum gen. nov., sp. nov. isolated from a pelagic Mediterranean zone
Author: Nikole E. Kimes, Mario López-Pérez, José David Flores-Félix, Martha-Helena Ramírez-Bahena, José M. Igual, Alvaro Peix, Francisco Rodriguez-Valera, Encarna Velázquez
Journal: Systematic and Applied Microbiology
Year: 2015
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32)Title: Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis
Author: Jessica M. Yano , Kristie Yu , Gregory P. Donaldson , Gauri G. Shastri , Phoebe Ann , Liang Ma , Cathryn R. Nagler , Rustem F. Ismagilov , Sarkis K. Mazmanian , Elaine Y. Hsiao
Journal: Cell
Year: 2015
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33)Title: The fungal microbiota of de-novo paediatric inflammatory bowel disease
Author: I. Mukhopadhya, R. Hansen, C. Meharg, J.M. Thomson, R.K. Russell, S.H. Berry, E.M. El-Omar, G.L. Hold
Journal: Microbes and Infection
Year: 2015
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34)Title: Data routing strategies in opportunistic mobile social networks: Taxonomy and open challenges
Author: Konglin Zhu, Wenzhong Li, Xiaoming Fu, Lin Zhang
Journal: Computer Networks
Year: 2015
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35)Title: From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology
Author: Pierre-Edouard Fournier, Jean-Christophe Lagier, Gregory Dubourg, Didier Raoult
Journal: Anaerobe
Year: 2015
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36)Title: Taxonomy and molecular epidemiology of Echinococcus granulosus sensu lato
Author: T. Romig, D. Ebi, M. Wassermann
Journal: Veterinary Parasitology
Year: 2015
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37)Title: Approach for classification and taxonomy within family Rickettsiaceae based on the Formal Order Analysis
Author: S. Shpynov, N. Pozdnichenko, A. Gumenuk
Journal: Microbes and Infection
Year: 2015
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38)Title: CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy
Author: Guanghong Zuo, Bailin Hao
Journal: Genomics, Proteomics & Bioinformatics
Year: 2015
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39)Title: Developing taxonomy for the domain ontology of construction contractual semantics: A case study on the AIA A201 document
Author: Jia Niu, Raja R.A. Issa
Journal: Advanced Engineering Informatics
Year: 2015
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40)Title: Taxonomy and molecular phylogeny of two novel ciliates, with establishment of a new genus, Pseudogastrostyla n. g. (Ciliophora, Hypotrichia, Oxytrichidae)
Author: Yangbo Fan, Xiaolu Zhao, Xiaozhong Hu, Miao Miao, Alan Warren, Weibo Song
Journal: European Journal of Protistology
Year: 2015
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41)Title: “Barcoding” and ISSR data illuminate a problematic infraspecific taxonomy for Chrysanthemoides monilifera (Calenduleae; Asteraceae): Lessons for biocontrol of a noxious weed
Author: Nigel P. Barker, Iain Paterson, Seranne Howis
Journal: Biochemical Systematics and Ecology
Year: 2015
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42)Title: “New Microbes New Infections promotes modern prokaryotic taxonomy: a new section “TaxonoGenomics: new genomes of microorganisms in humans”
Author: Pierre-Edouard Fournier, Michel Drancourt
Journal: New Microbes and New Infections
Year: 2015
View Abstract | Full Paper Request



43)Title: “Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
Author: Stefanie P. Glaeser, Peter Kämpfer
Journal: Systematic and Applied Microbiology
Year: 2015
View Abstract | Full Paper Request



44)Title: “Taxonomy of the southern African Psoralea aphylla complex (Psoraleeae, Leguminosae)
Author: Meshack N. Dludlu, A. Muthama Muasya, Samson B.M. Chimphango, Charles H. Stirton
Journal: South African Journal of Botany
Year: 2015
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45)Title: “Taxonomy, phylogenetics and biogeography of Chesneya (Fabaceae), evidenced from data of three sequences, ITS, trnS-trnG, and rbcL
Author: Ming-Li Zhang, Zhi-Bin Wen, Xiao-Li Hao, Vyacheslav V. Byalt, Alexander P. Sukhorukov, Stewart C. Sanderson
Journal: Biochemical Systematics and Ecology
Year: 2015
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46)Title: “The Molecular Taxonomy of Primary Prostate Cancer
Author: Adam Abeshouse, Jaeil Ahn, Rehan Akbani, Adrian Ally Samirkumar
Journal: Cell
Year: 2015
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47)Title: “Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling
Author: Dimitrios Floudas, David S. Hibbett
Journal: Fungal Biology
Year: 2015
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48)Title: “Molecular phylogeny and a modified approach of character-based barcoding refining the taxonomy of New Caledonian freshwater gastropods (Caenogastropoda, Truncatelloidea, Tateidae)?
Author: Susan Zielske, Martin Haase
Journal: Molecular Phylogenetics and Evolution
Year: 2015
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49)Title: “Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics
Author: Ernesto Ormeño-Orrillo, Luis E. Servín-Garcidueñas, Marco A. Rogel, Víctor González, Humberto Peralta, Jaime Mora, Julio Martínez-Romero, Esperanza Martínez-Romero
Journal: Systematic and Applied Microbiology
Year: 2015
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50)Title: “Characterization of the Macropodus opercularis complete mitochondrial genome and family Channidae taxonomy using Illumina-based de novo transcriptome sequencing
Author: Xidong Mu, Yi Liu, Mingxin Lai, Hongmei Song, Xuejie Wang, Yinchang Hu, Jianren Luo
Journal: Gene
Year: 2015
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1)Title: A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species
Author: Dhamodharan Ramasamy, Ajay Kumar Mishra, Jean-Christophe Lagier, Roshan Padhmanabhan, Morgane Rossi, Erwin Sentausa, Didier Raoult and Pierre-Edouard Fournier
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2014
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2)Title: Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
Author: Jongsik Chun and Fred A. Rainey
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2014
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3)Title: Current taxonomy of phages infecting lactic acid bacteria
Author: Jennifer Mahony and Douwe van Sinderen
Journal: Frontiers in Microbiology
Year: 2014
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4)Title: Genetic diversity of rhizobia isolated from nodules of the relic species Vavilovia formosa (Stev.) Fed.
Author: Vera I. Safronova, Anastasiia K. Kimeklis, Elena P. Chizhevskaya, Andrey A. Belimov, Evgeny E. Andronov, Alexander G. Pinaev, Andrey R. Pukhaev, Konstantin P. Popov, Igor A. Tikhonovich
Journal: Antonie van Leeuwenhoek
Year: 2014
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5)Title: Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
Author: Mincheol Kim, Hyun-Seok Oh, Sang-Cheol Park and Jongsik Chun
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2014
View Abstract | Full Paper Request

6)Title: Taxonomic Update on Enteric- and Aquatic-Associated Gram-Negative Bacteria: Proposed New Species and Classification Changes
Author: J. Michael Janda, Ph.D.
Journal: Clinical Microbiology Newsletter
Year: 2014
View Abstract | Full Paper Request

7)Title: Non-ribosomal phylogenetic exploration of Mollicute species: New insights into haemoplasma taxonomy
Author: C.A.E. Hicks, E.N. Barker, C. Brady, C.R. Stokes, C.R. Helps, S. Tasker
Journal: Infection, Genetics and Evolution
Year: 2014
View Abstract | Full Paper Request

8)Title: Climate change alters ecological strategies of soil bacteria
Author: Sarah E. Evans, Matthew D. Wallenstein
Journal: Ecology Letters
Year: 2014
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9)Title: Prevalence of potentially thermophilic microorganisms in biofilms from greenhouse-enclosed drip irrigation systems
Author: Olga Sánchez, Isabel Ferrera, Laura Garrido, Maria del Mar Gómez-Ramos, Amadeo Rodríguez Fernández-Alba, Jordi Mas
Journal: Archives of Microbiology
Year: 2014
View Abstract | Full Paper Request

10)Title: Unravelling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations
Author: Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa and Bernd W. Brandt
Journal: Bioinformatics
Year: 2014
View Abstract | Full Paper Request


11)Title: Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing
Author: Chih-Min Chiu, Feng-Mao Lin, Tzu-Hao Chang, Wei-Chih Huang, Chao Liang, Ting Yang, Wei-Yun Wu, Tzu-Ling Yang, Shun-Long Weng, Hsien-Da Huang
Journal: Journal of Clinical Bioinformatics
Year: 2014
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12)Title: Genome Plasticity and Dynamic Evolution of Phytopathogenic Pseudomonads and Related Bacteria
Author: Marco Scortichini, Simone Marcelletti, Patrizia Ferrante, Milena Petriccione, Emanuela Torelli, Giuseppe Firrao
Journal: Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria
Year: 2014
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13)Title: Molecular discrimination and identification of Acetobacter genus based on the partial heat shock protein 60 gene (hsp60) sequences
Author: Chien-Hsun Huang, Mu-Tzu Chang, Lina Huang, Wen-Shen Chua
Journal: Journal of the Science of Food and Agriculture
Year: 2014
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14)Title: Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies
Author: E. Egidi, G. S. de Hoog, D. Isola, S. Onofri, W. Quaedvlieg, M. de Vries, G. J. M. Verkley, J. B. Stielow, L. Zucconi, L. Selbmann
Journal: Fungal Diversity
Year: 2014
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15)Title: Susceptibility Profiles of Nocardia Isolates Based on Current Taxonomy
Author: Robert Schlaberg, Mark A. Fisher and Kimberley E. Hanson
Journal: Antimicrobial Agents and Chemotherapy
Year: 2014
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16)Title: Cyclic dipeptides from lactic acid bacteria inhibit the proliferation of pathogenic fungi
Author: Min-Kyu Kwak, Rui Liu, Min-Kyu Kim, Dohyun Moon, Andrew HyoungJin Kim, Sung-Hyun Song, Sa-Ouk Kang
Journal: Journal of Microbiology
Year: 2014
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17)Title: Extracellular Electron Transport-Mediated Fe(III) Reduction by a Community of Alkaliphilic Bacteria That Use Flavins as Electron Shuttles
Author: Samuel J. Fuller, Duncan G. G. McMillan, Marc B. Renz, Martin Schmidt, Ian T. Burke and Douglas I. Stewart
Journal: Applied and Environmental Microbiology
Year: 2014
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18)Title: Bacterial community dynamics during industrial malting, with an emphasis on lactic acid bacteria
Author: A. Justé, S. Malfliet, M. Waud, S. Crauwels, L. De Cooman, G. Aerts, T.L. Marsh, S. Ruyters, K. Willems, P. Busschaert, B. Lievens
Journal: Food Microbiology
Year: 2014
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19)Title: Isolation and Characterization of a New Moderately Halophilic Bacterium Strain SM. 200-5 from Solar Saltern Ponds
Author: Gaochao Xu, Yuangao Deng, Donghui Song, Liying Sui
Journal: Proceedings of the 2012 International Conference on Applied Biotechnology (ICAB 2012)
Year: 2014
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20)Title: Abundance and community structure of ammonia-oxidizing bacteria and archaea in purple soil under long-term fertilization
Author: Zhifeng Zhou, Xiaojun Shi, Yong Zheng, Zixian Qin, Deti Xie, Zhenlun Li, Tao Guo
Journal: European Journal of Soil Biology
Year: 2014
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21)Title: Understanding molecular identification and polyphasic taxonomic approaches for genetic relatedness and phylogenetic relationships of microorganisms
Author: Surajit Das, Hirak R. Dash, Neelam Mangwani, Jaya Chakraborty, Supriya Kumari
Journal: Journal of Microbiological Methods
Year: 2014
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22)Title: Prevalence of potentially thermophilic microorganisms in biofilms from greenhouse-enclosed drip irrigation systems
Author: Olga Sánchez, Isabel Ferrera, Laura Garrido, Maria del Mar Gómez-Ramos, Amadeo Rodríguez Fernández-Alba, Jordi Mas
Journal: Archives of Microbiology
Year: 2014
View Abstract | Full Paper Request

23)Title: StrainInfo introduces electronic passports for microorganisms
Author: Bert Verslyppe, Wim De Smet, Bernard De Baets, Paul De Vos, Peter Dawyndt
Journal: Systematic and Applied Microbiology
Year: 2014
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24)Title: Efficacy of the Precise Climate Controller on the reduction of indoor microorganisms
Author: Greetha Moungthong, Pana Klamkam, Prasit Mahakit, Thanit Chalermwatanachai, Sudaluck Thunyaharn, Veerapol Monyakul
Journal: Asia Pac Allergy
Year: 2014
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25)Title: Micro-organisms in latex and natural rubber coagula of Hevea brasiliensis and their impact on rubber composition, structure and properties
Author: M. Salomez, M. Subileau, J. Intapun, F. Bonfils, J. Sainte-Beuve, L. Vaysse, E. Dubreucq
Journal: Journal of Applied Microbiology
Year: 2014
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26)Title: Diversity and Transport of Microorganisms in Intertidal Sands of the California Coast
Author: Alexandria B. Boehm, Kevan M. Yamahara, Lauren M. Sassoubre
Journal: Appl. Environ. Microbiol
Year: 2014
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27)Title: Recent Concepts in Fungal Taxonomy: A Review
Author: Abhishek Katoch, Pooja Kapoor
Journal: Journal of Agriculture and Allied Sciences
Year: 2014
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28)Title: Identification of fungal microorganisms by MALDI-TOF mass spectrometry
Author: Jana Chalupová, Martin Raus, Michaela Sedlárová, Marek Šebela
Journal: Biotechnology Advances
Year: 2014
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29)Title: A novel addition of fungal taxa from Indian sub-continent
Author: Thakur, R. S.; Rai, A. N.; Dudey, M. K
Journal: International Journal of Plant, Animal and Environmental Sciences
Year: 2014
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30)Title: Further thoughts on the taxonomy and vector role of Rhipicephalus sanguineus group ticks
Author: Filipe Dantas-Torres, Domenico Otranto
Journal: Veterinary Parasitology
Year: 2014
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31)Title: First report of Diplodia mutila on Ligustrum vulgare, taxonomy of Botryosphaeria stevensii Shoemaker
Author: Kuch, J.; Cech, T. L.; Konrad, H.; Bedlan, G
Journal: Journal für Kulturpflanzen
Year: 2014
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32)Title: Taxonomy of halophilic Archaea: current status and future challenges
Author: Aharon Oren
Journal: Extremophiles
Year: 2014
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33)Title: Efficacy of the Precise Climate Controller on the reduction of indoor microorganisms
Author: Greetha Moungthong, Pana Klamkam, Prasit Mahakit, Thanit Chalermwatanachai, Sudaluck Thunyaharn, Veerapol Monyakul
Journal: Asia Pac Allergy
Year: 2014
View Abstract | Full Paper Request

34)Title: Diversity and Transport of Microorganisms in Intertidal Sands of the California Coast
Author: Alexandria B. Boehm, Kevan M. Yamahara and Lauren M. Sassoubre
Journal: Applied and Environmental Microbiology
Year: 2014
View Abstract | Full Paper Request

35)Title: How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on Earth
Author: Daniel J. G. Lahr, Haywood Dail Laughinghouse IV, Angela M. Oliverio, Feng Gao, Laura A. Katz
Journal: BioEssays
Year: 2014
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36)Title: Characterization and Identification of Clinically Relevant Microorganisms Using Rapid Evaporative Ionization Mass Spectrometry
Author: Nicole Strittmatter, Monica Rebec, Emrys A. Jones, Ottmar Golf, Alireza Abdolrasouli, Julia Balog, Volker Behrends, Kirill A. Veselkov, Zoltan Takats
Journal: Analytical Chemistry
Year: 2014
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37)Title: Benchmarking of Methods for Genomic Taxonomy
Author: Mette V. Larsen, Salvatore Cosentino, Oksana Lukjancenko, Dhany Saputra, Simon Rasmussen, Henrik Hasman, Thomas Sicheritz-Pontén, Frank M. Aarestrup, David W. Ussery and Ole Lund
Journal: J. Clin. Microbiol
Year: 2014
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38)Title: Detection of microorganisms in newly packaged brackets of six different commercial brands
Author: Claudia Montoya Pérez, Jaime Aguilar Acevedo
Journal: Revista Mexicana de Ortodoncia
Year: 2014
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39)Title: Modulation of Respiratory TLR3-Anti-Viral Response by Probiotic Microorganisms: Lessons Learned from Lactobacillus rhamnosus CRL1505
Author: Haruki Kitazawa, Julio Villena
Journal: Front Immunol
Year: 2014
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40)Title: Diverse alkane hydroxylase genes in microorganisms and environments
Author: Yong Nie, Chang-Qiao Chi, Hui Fang, Jie-Liang Liang, She-Lian Lu, Guo-Li Lai, Yue-Qin Tang, Xiao-Lei Wu
Journal: Scientific Reports
Year: 2014
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41)Title: Type material in the NCBI Taxonomy Database
Author: Scott Federhen
Journal: Nucleic Acids Research
Year: 2014
View Abstract | Full Paper Request

42)Title: Isolation and Characterization of s-Butanol Tolerant Microorganisms
Author: Litao Shi, Hongjiang Yang, Qian Li, Xuying Qin
Journal: Lecture Notes in Electrical Engineering
Year: 2014
View Abstract

43)Title: Toxicity of Nanomaterials to Microorganisms: Mechanisms, Methods, and New Perspectives
Author:  Andreia Fonseca de Faria, Ana Carolina Mazarin de Moraes, Oswaldo L. Alves
Journal: Nanomedicine and Nanotoxicology
Year: 2014
View Abstract

44)Title: Distribution and taxonomy of Enterococci from the Davis Station wastewater discharge, Antarctica
Author: Spence, Robert J
Journal: Queensland University of Technology
Year: 2014
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45)Title: Taxonomy of cyanobacteria: a contribution to consensus approach
Author: Katarzyna A. Palinska, Waldemar Surosz
Journal: Hydrobiologia
Year: 2014
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46)Title: Micro-organisms in latex and natural rubber coagula of Hevea brasiliensis and their impact on rubber composition, structure and properties
Author: M. Salomez, M. Subileau, J. Intapun, F. Bonfils, J. Sainte-Beuve, L. Vaysse, E. Dubreucq
Journal: Journal of Applied Microbiology
Year: 2014
View Abstract | Full Paper Request

47)Title: Behaviour of 99Tc in aqueous solutions in the presence of iron oxides and microorganisms
Author: Ruta Druteikiene, Benedikta Lukšiene, Dalia Peciulyte, Kestutis Mažeika, Arunas Gudelis, Dalis Baltrunas
Journal: Applied Radiation and Isotopes
Year: 2014
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48)Title: Diversity of cultivable microorganisms in the Eastern part of Urmia Salt Lake, Iran
Author: Kashi, F. J.; Owlia, P.; Amoozegar, M. A.; Yakhchali, B.; Kazemi, B
Journal: Journal of Microbiology, Biotechnology and Food Sciences
Year: 2014
View Abstract | Full Paper Request

________________________________________________________________________________________________________________

1)Title: Application of 13C-stable isotope probing to identify RDX-degrading microorganisms in groundwater
Author: Kun-Ching Cho, Do Gyun Lee, HyungKeun Roh, Mark E. Fuller, Paul B. Hatzinger, Kung-Hui Chu
Journal: Environmental Pollution
Year: 2013
View Abstract | Full Paper Request

2)Title: Diversity of microorganisms from forest soils differently polluted with heavy metals
Author: Marcin Chodak, Marcin Golebiewski, Justyna Morawska-Ploskonka, Katarzyna Kuduk, Maria Niklinska
Journal: Applied Soil Ecology
Year: 2013
View Abstract | Full Paper Request

3)Title: Highlights on molecular identification of closely related species
Author: Lígia A. Almeida, Ricardo Araujo
Journal: Infection, Genetics and Evolution
Year: 2013
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4)Title: Molecular Phylogenetic Redefinition of Herpetomonas(Kinetoplastea, Trypanosomatidae), a Genus of Insect Parasites Associated with Flies
Author: Tarcilla C. Borghesan, Robson C. Ferreira, Carmen S.A. Takata, Marta Campaner, Charlotte C. Borda, Fernando Paiva, Regina V. Milder, Marta M.G. Teixeira, Erney P. Camargo
Journal: Protist
Year: 2013
View Abstract | Full Paper Request

5)Title: Principles for the risk assessment of genetically modified microorganisms and their food products in the European Union
Author: Jaime Aguilera, Ana R. Gomes, Irina Olaru
Journal: International Journal of Food Microbiology
Year: 2013
View Abstract | Full Paper Request

6)Title: Sphaerospora sensu stricto: Taxonomy, diversity and evolution of a unique lineage of myxosporeans (Myxozoa)
Author: Pavla Bartošová, Ivan Fiala, Miloslav Jirku, Martina Cinková, Monica Caffara, Maria Letizia Fioravanti, Stephen Douglas Atkinson, Jerri Lee Bartholomew, Astrid Sibylle Holzer
Journal: Molecular Phylogenetics and Evolution
Year: 2013
View Abstract | Full Paper Request

7)Title: Taxonomy and chemical characterization of new antibiotics produced by Saccharothrix SA198 isolated from a Saharan soil
Author: D. Boubetra, N. Sabaou, A. Zitouni, C. Bijani, A. Lebrihi, F. Mathieu
Journal: Microbiological Research
Year: 2013
View Abstract | Full Paper Request

8)Title: Top-down sequencing of Apis dorsata apamin by MALDI-TOF MS and evidence of its inactivity against microorganisms
Author: D. Baracchi, G. Mazza, E. Michelucci, G. Pieraccini, S. Turillazzi, G. Moneti
Journal: Toxicon
Year: 2013
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_____________________________________________________________________________________________________________

1)Title: Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences
Author: Flores R, Shi J, Gail MH, Gajer P, Ravel J, Goedert JJ
Journal: Eur J Clin Invest
Year: 2012
View Abstract | Full Paper Request

2)Title: Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing
Author: Rademacher A, Zakrzewski M, Schlüter A, Schönberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M
Journal: FEMS Microbiol Ecol
Year: 2012
View Abstract | Full Paper Request

3)Title: Cow teat skin, a potential source of diverse microbial populations for cheese production
Author: Verdier-Metz I, Gagne G, Bornes S, Monsallier F, Veisseire P, Delbès-Paus C, Montel MC
Journal: Appl Environ Microbiol
Year: 2012
View Abstract | Full Paper Request

4)Title: Dirichlet multinomial mixtures: generative models for microbial metagenomics
Author: Holmes I, Harris K, Quince C
Journal: PLoS One
Year: 2012
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5)Title: Diversity of five anaerobic toluene-degrading microbial communities investigated using stable isotope probing
Author: Sun W, Cupples AM
Journal: Appl Environ Microbiol
Year: 2012
View Abstract | Full Paper Request

6)Title: Environmental and epidemiological surveillance of Vibrio cholerae in a cholera-endemic region in India with freshwater environs
Author: Mishra A, Taneja N, Sharma M
Journal: J Appl Microbiol
Year: 2012
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7)Title: Interactions between exotic invasive plants and soil microbes in the rhizosphere suggest that 'everything is not everywhere'
Author: Rout ME, Callaway RM
Journal: Ann Bot
Year: 2012
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8)Title: Lactic acid bacterium and yeast microbiotas of 19 sourdoughs used for traditional/typical italian breads: interactions between ingredients and microbial species diversity
Author: Minervini F, Di Cagno R, Lattanzi A, De Angelis M, Antonielli L, Cardinali G, Cappelle S, Gobbetti M
Journal: Appl Environ Microbiol
Year: 2012
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9)Title: Low diversity of the gut microbiota in infants with atopic eczema
Author: Abrahamsson TR, Jakobsson HE, Andersson AF, Björkstén B, Engstrand L, Jenmalm MC
Journal: J Allergy Clin Immunol
Year: 2012
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10)Title: Metabolic classification of microbial genomes using functional probes
Author: Lee CC, Lo WC, Lai SM, Chen YP, Tang CY, Lyu PC
Journal: BMC Genomics
Year: 2012
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11)Title: Metagenomic analysis of a stable trichloroethene-degrading microbial community
Author: Brisson VL, West KA, Lee PK, Tringe SG, Brodie EL, Alvarez-Cohen L
Journal: ISME J
Year: 2012
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12)Title: Microbial air contamination in indoor environment of a university library
Author: Kalwasinska A, Burkowska A, Wilk I
Journal: Ann Agric Environ Med
Year: 2012
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13)Title: Microbial biodiversity, quality and shelf life of microfiltered and pasteurized extended shelf life (ESL) milk from Germany, Austria and Switzerland
Author: Schmidt VS, Kaufmann V, Kulozik U, Scherer S, Wenning M
Journal: Int J Food Microbiol
Year: 2012
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14)Title: Microbial community analysis during continuous fermentation of thermally hydrolysed waste activated sludge
Author: Cirne DG, Bond P, Pratt S, Lant P, Batstone DJ
Journal: Water Sci Technol
Year: 2012
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15)Title: Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal
Author: Kadnikov VV, Mardanov AV, Beletsky AV, Shubenkova OV, Pogodaeva TV, Zemskaya TI, Ravin NV, Skryabin KG
Journal: FEMS Microbiol Ecol
Year: 2012
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16)Title: Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany)
Author: Röske K, Sachse R, Scheerer C, Röske I
Journal: Syst Appl Microbiol
Year: 2012
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17)Title: Microbial diversity and interactions in subgingival biofilm communities
Author: Diaz PI
Journal: Front Oral Biol
Year: 2012
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18)Title: Novel bacterial isolate from Permian groundwater, capable of aggregating potential biofuel-producing microalga Nannochloropsis oceanica IMET1
Author: Wang H, Laughinghouse HD 4th, Anderson MA, Chen F, Willliams E, Place AR, Zmora O, Zohar Y, Zheng T, Hill RT
Journal: Appl Environ Microbiol
Year: 2012
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19)Title: Phototrophic Phylotypes Dominate Mesothermal Microbial Mats Associated with Hot Springs in Yellowstone National Park
Author: Ross KA, Feazel LM, Robertson CE, Fathepure BZ, Wright KE, Turk-Macleod RM, Chan MM, Held NL, Spear JR, Pace NR
Journal: Microb Ecol
Year: 2012
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20)Title: Phylogenetic Classification of Diverse LysR-Type Transcriptional Regulators of a Model Prokaryote Geobacter sulfurreducens
Author: Krushkal J, Qu Y, Lovley DR, Adkins RM
Journal: J Mol Evol
Year: 2012
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21)Title: Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
Author: Soergel DA, Dey N, Knight R, Brenner SE
Journal: ISME J
Year: 2012
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22)Title: Spatial distribution of viruses associated with planktonic and attached microbial communities in hydrothermal environments
Author: Yoshida-Takashima Y, Nunoura T, Kazama H, Noguchi T, Inoue K, Akashi H, Yamanaka T, Toki T, Yamamoto M, Furushima Y, Ueno Y, Yamamoto H, Takai K
Journal: Appl Environ Microbiol
Year: 2012
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23)Title: SSuMMo: rapid analysis, comparison and visualization of microbial communities
Author: Leach AL, Chong JP, Redeker KR
Journal: Bioinformatics
Year: 2012
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24)Title: [Taxonomic characteristics and mixed communities of wound infection agents in patients of reanimation and surgical departments of a hospital]
Author: Men'shikova ED, Kiselevskaia-Babinina IV, Men'shikov DD, Godkov MA
Journal: Zh Mikrobiol Epidemiol Immunobiol
Year: 2012
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25)Title: TBC: A clustering algorithm based on prokaryotic taxonomy
Author: Lee JH, Yi H, Jeon YS, Won S, Chun J
Journal: J Microbiol
Year: 2012
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26)Title: The role of homoacetogenic bacteria as efficient hydrogen scavengers in microbial electrochemical cells (MXCs)
Author: Parameswaran P, Torres CI, Kang DW, Rittmann BE, Krajmalnik-Brown R
Journal: Water Sci Technol
Year: 2012
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27)Title: The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities
Author: Brucker RM, Bordenstein SR
Journal: Evolution
Year: 2012
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28)Title: Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability
Author: Kathleen M. Morrow, Anthony G. Moss, Nanette E. Chadwick, Mark R. Liles
Journal: Applied and Environmental Microbiology
Year: 2012
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29)Title: Caenispirillum salinarum sp. nov., a member of the family Rhodospirillaceae isolated from a solar saltern
Author: C. Ritika, K. Suresh, P. Anil Kumar
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2012
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30)Title: Characterization of geographically distinct bacterial communities associated with coral mucus produced by Acropora spp. and Porites spp
Author: B. A. McKew, A. J. Dumbrell, S. D. Daud, L. Hepburn, E. Thorpe, L. Mogensen, C. Whitby
Journal: Applied and Environmental Microbiology
Year: 2012
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31)Title: Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms
Author: Jiemeng Liu, Haifeng Wang, Hongxing Yang, Yizhe Zhang, Jinfeng Wang, Fangqing Zhao, Ji Qi
Journal:  Nucleic Acids Research
Year: 2012
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32)Title: Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria
Author: Mengjin Liu, Celine Prakash, Arjen Nauta, Roland J. Siezen, Christof Francke
Journal: Journal of Bacteriology
Year: 2012
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33)Title: Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition
Author: Ben Ryall, Gustavo Eydallin, Thomas Ferenci
Journal: Microbiology and Molecular Biology Reviews
Year: 2012
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34)Title: Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamrix trees across the Sonoran Desert
Author: Omri M. Finkel, Adrien Y. Burch, Tal Elad, Susan M. Huse, Steven E. Lindow, Anton F. Post, Shimshon Belkin
Journal: Applied and Environmental Microbiology
Year: 2012
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35)Title: Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
Author: Anna Klindworth, Elmar Pruesse, Timmy Schweer, Jörg Peplies, Christian Quast, Matthias Horn, Frank Oliver Glöckner
Journal:  Nucleic Acids Research
Year: 2012
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36)Title: Firing Range Soils Yield a Diverse Array of Fungal Isolates Capable of Organic Acid Production and Pb Mineral Solubilization
Author: Tarah S. Sullivan, Neil R. Gottel, Nicholas Basta, Philip M. Jardine, Christopher W. Schadt
Journal: Applied and Environmental Microbiology
Year: 2012
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37)Title: Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
Author: Lu Fan, David Reynolds, Michael Liu, Manuel Stark, Staffan Kjelleberg, Nicole S. Webster, Torsten Thomas
Journal:  Proceedings of the National Academy of Sciences of the United States of America
Year: 2012
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38)Title: High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.)
Author: Tim Köhler, Carsten Dietrich, Rudolf H. Scheffrahn, Andreas Brune
Journal: Appl Environ Microbiol
Year: 2012
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39)Title: Identification of Soil Bacteria Susceptible to TiO
Author: Yuan Ge, Joshua P. Schimel, Patricia A. Holden
Journal: Applied and Environmental Microbiology
Year: 2012
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40)Title: Metagenomic analyses of drinking water receiving different disinfection treatments
Author: Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Journal: Applied and Environmental Microbiology
Year: 2012
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41)Title: Microbiological and physicochemical characterization of small-scale cocoa fermentations and screening of yeast and bacterial strains to develop a defined starter culture
Author: Gilberto Vinícius de Melo Pereira, Maria Gabriela da Cruz Pedrozo Miguel, Cíntia Lacerda Ramos, Rosane Freitas Schwan
Journal: Applied and Environmental Microbiology
Year: 2012
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42)Title: Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans
Author: Winnie Ridderberg, Mikala Wang, Niels Nørskov-Lauritsen
Journal: Journal of Clinical Microbiology
Year: 2012
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43)Title: Phylogeny of Rieske/cytb Complexes with a Special Focus on the Haloarchaeal Enzymes
Author: Frauke Baymann, Barbara Schoepp-Cothenet, Evelyne Lebrun, Robert van Lis and Wolfgang Nitschke
Journal: Genome Biology and Evolution
Year: 2012
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44)Title: Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars
Author: Myron T. La Duc, Parag Vaishampayan, Henrik R. Nilsson, Tamas Torok, Kasthuri Venkateswaran
Journal: Applied and Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

45)Title: Rapid identification of high-confidence taxonomic assignments for metagenomic data
Author: Norman J. MacDonald, Donovan H. Parks, Robert G. Beiko
Journal: Nucleic Acids Research
Year: 2012
View Abstract | Full Paper Request

46)Title: Rhizobium halophytocola sp. nov., isolated from the root of a coastal dune plant
Author: Fehmida Bibi, Eu Jin Chung, Ajmal Khan, Che Ok Jeon, Young Ryun Chung
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2012
View Abstract | Full Paper Request

47)Title: Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment
Author: Verena S. J. Schmidt, Mareike Wenning, Siegfried Scherer
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2012
View Abstract | Full Paper Request

48)Title: Streptomyces herbaceus sp. nov., Streptomyces incanus sp. nov. and Streptomyces pratens sp. nov., isolated from the soil of a hay meadow
Author: Byung-Yong Kim, Xiaoying Rong, Tiago D. Zucchi, Avinash N. V. Bonda, Ying Huang, Michael Goodfellow
Journal: International Journal of Systematic and Evolutionary Microbiology
Year: 2012
View Abstract | Full Paper Request

49)Title: Taxonomic binning of metagenome samples generated by next-generation sequencing technologies
Author: Johannes Dröge, Alice C. McHardy
Journal: Briefings in Bioinformatics
Year: 2012
View Abstract | Full Paper Request

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1)Title: A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa
Author: Sutcliffe IC, Trujillo ME, Goodfellow M
Journal: Antonie Van Leeuwenhoek
Year: 2011
View Abstract | Full Paper Request

2)Title: A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface
Author: Li X, LeBlanc J, Truong A, Vuthoori R, Chen SS, Lustgarten JL, Roth B, Allard J, Ippoliti A, Presley LL, Borneman J, Bigbee WL, Gopalakrishnan V, Graeber TG, Elashoff D, Braun J, Goodglick L
Journal: PLoS One
Year: 2011
View Abstract | Full Paper Request

3)Title: Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum
Author: Comeau AM, Li WK, Tremblay JÉ, Carmack EC, Lovejoy C
Journal: PLoS One
Year: 2011
View Abstract | Full Paper Request

4)Title: Arsenic accumulating and transforming bacteria isolated from contaminated soil for potential use in bioremediation
Author: Banerjee S, Datta S, Chattyopadhyay D, Sarkar P
Journal: J Environ Sci Health A Tox Hazard Subst Environ Eng
Year: 2011
View Abstract | Full Paper Request

5)Title: Community-based interference against integration of Pseudomonas aeruginosa into human salivary microbial biofilm
Author: He X, Hu W, He J, Guo L, Lux R, Shi W
Journal: Mol Oral Microbiol
Year: 2011
View Abstract | Full Paper Request

6)Title: Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems
Author: Roux S, Enault F, Bronner G, Debroas D
Journal: FEMS Microbiol Ecol
Year: 2011
View Abstract | Full Paper Request

7)Title: Coral-associated marine fungi form novel lineages and heterogeneous assemblages
Author: Wang H, Laughinghouse HD 4th, Anderson MA, Chen F, Willliams E, Place AR, Zmora O, Zohar Y, Zheng T, Hill RT
Journal: ISME J
Year: 2011
View Abstract | Full Paper Request

8)Title: Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds
Author: Hongzhi Tang,Hao Yu,Qinggang Li,Xiaoyu Wang,Zhonghui Gai,Guangbo Yin,Fei Su,Fei Tao,Cuiqing Ma, Ping Xu
Journal: Journal of Bacteriology
Year: 2011
View Abstract | Full Paper Request

9)Title: Impact of anthracene addition on microbial community structure in soil microcosms from contaminated and uncontaminated sites
Author: Wang Q, Zhang S, Zou L, Xie S
Journal: Biomed Environ Sci
Year: 2011
View Abstract | Full Paper Request

10)Title: INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences
Author: Mohammed MH, Ghosh TS, Reddy RM, Reddy CV, Singh NK, Mande SS
Journal: BMC Genomics
Year: 2011
View Abstract | Full Paper Request

11)Title: Influence of invasive plant Coreopsis grandiflora on functional diversity of soil microbial communities
Author: Hua C, Jian L, Yongli Z, Qiang W, Xiuli G, Yinghua W, Renqing W
Journal: J Environ Biol
Year: 2011
View Abstract | Full Paper Request

12)Title: Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
Author: Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK
Journal: Nature
Year: 2011
View Abstract | Full Paper Request

13)Title: Microbial biogeography of public restroom surfaces
Author: Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R, Fierer N
Journal: PLoS One
Year: 2011
View Abstract | Full Paper Request

14)Title: Microbial community composition of anoxic marine sediments in the Bay of Cádiz (Spain)
Author: Köchling T, Lara-Martín P, González-Mazo E, Amils R, Sanz JL
Journal: Int Microbiol
Year: 2011
View Abstract | Full Paper Request

15)Title: Microbial diversity and community composition in recirculating vertical flow constructed wetlands
Author: Sklarz MY, Gillor O, Gross A, Yakirevich A, Soares MI
Journal: Water Sci Technol
Year: 2011
View Abstract | Full Paper Request

16)Title: [Microbial diversity in sediments of core HS-PC 500 from Shenhu Area, northern South China Sea]
Author: Jiao L, Su X, Chen F, Zhang Y, Jiang H, Luo Y, Dong H
Journal: Wei Sheng Wu Xue Bao
Year: 2011
View Abstract | Full Paper Request

17)Title: [Microbial diversity of a community for ensiling rice straw at low temperature and fermentation dynamics]
Author: Yang H, Yuan X, Liu X, Wang X, Cui Z
Journal: Wei Sheng Wu Xue Bao
Year: 2011
View Abstract | Full Paper Request

18)Title: Microbial diversity in deep-sea sediment from the cobalt-rich crust deposit region in the Pacific Ocean
Author: Liao L, Xu XW, Jiang XW, Wang CS, Zhang DS, Ni JY, Wu M
Journal: FEMS Microbiol Ecol
Year: 2011
View Abstract | Full Paper Request

19)Title: Microbial methane production in oxygenated water column of an oligotrophic lake
Author: Grossart HP, Frindte K, Dziallas C, Eckert W, Tang KW
Journal: Proc Natl Acad Sci U S A
Year: 2011
View Abstract | Full Paper Request

20)Title: Molecular musings in microbial ecology and evolution
Author: Case RJ, Boucher Y
Journal: Biol Direct
Year: 2011
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21)Title: Spatial variation of waterborne Escherichia coli - implications for routine water quality monitoring
Author: Quilliam RS, Clements K, Duce C, Cottrill SB, Malham SK, Jones DL
Journal: J Water Health
Year: 2011
View Abstract | Full Paper Request

22)Title: Thalassospira permensis sp. nov., a new terrestrial halotolerant bacterium isolated from a naphthalene-utilizing microbial consortium
Author: Plotnikova EG, Anan'ina LN, Krausova VI, Ariskina EV, Prisyazhnaya NV, Lebedev AT, Demakov VA, Evtushenko LI
Journal: Mikrobiologiia
Year: 2011
View Abstract | Full Paper Request

23)Title: The microbial opsin family of optogenetic tools
Author: Zhang F, Vierock J, Yizhar O, Fenno LE, Tsunoda S, Kianianmomeni A, Prigge M, Berndt A, Cushman J, Polle J, Magnuson J, Hegemann P, Deisseroth K
Journal: Cell
Year: 2011
View Abstract | Full Paper Request

24)Title: Uncultivated microbial eukaryotic diversity: a method to link ssu rRNA gene sequences with morphology
Author: Hirst MB, Kita KN, Dawson SC
Journal: PLoS One
Year: 2011
View Abstract | Full Paper Request

25)Title: Using QIIME to analyze 16S rRNA gene sequences from microbial communities
Author: Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R
Journal: Curr Protoc Bioinformatics
Year: 2011
View Abstract | Full Paper Request

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1)Title: A global network of coexisting microbes from environmental and whole-genome sequence data
Author: Samuel Chaffron, Hubert Rehrauer, Jakob Pernthaler, Christian von Mering
Journal: Genome Research
Year: 2010
View Abstract | Full Paper Request

2)Title: Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
Author: Marie L. Cuvelier, Andrew E. Allen, Adam Monier, John P. McCrow, Monique Messié, Susannah G. Tringe, Tanja Woyke, Rory M. Welsh, Thomas Ishoey, Jae-Hyeok Lee, Brian J. Binder, Chris L. DuPont, Mikel Latasa, Cédric Guigand, Kurt R. Buck, Jason Hilton, Mathangi Thiagarajan, Elisabet Caler, Betsy Read, Roger S. Lasken, Francisco P. Chavez, and Alexandra Z. Worden
Journal: PNAS
Year: 2010
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3)Title: Characterization of Environmentally Persistent Escherichia coli Isolates Leached from an Irish Soil
Author: Fiona P. Brennan, Florence Abram, Fabio A. Chinalia, Karl G. Richards, Vincent O’Flaherty
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (226 KB)

4)Title: Identification of a bacterial di-haem cytochrome c peroxidase from Methylomicrobium album BG8
Author: O. A. Karlsen, Ø. Larsen, H. B. Jensen
Journal: Microbiology
Year: 2010
View Abstract | Full Paper Request

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1)Title: Phylogeny of rock-inhabiting fungi related to Dothideomycetes
Author: C. Ruibal, C. Gueidan, L. Selbmann, A.A. Gorbushina, P.W. Crous, J.Z. Groenewald, L. Muggia, M. Grube, D. Isola, C.L. Schoch, J.T. Staley, F. Lutzoni, G.S. de Hoog
Journal: Studies in Mycology
Year: 2009
View Abstract | Full Paper  (1,228 KB)

2)Title: Biodiversity of cyanobacteria and green algae on monuments in the Mediterranean Basin: an overview
Author: Maria Filomena Macedo, Ana Ze´ lia Miller, Ame´ lia Dioni´sio, Cesareo Saiz-Jimenez
Journal: Microbiology
Year: 2009
View Abstract | Full Paper  (647 KB)

3)Title: Phylogeny of rock-inhabiting fungi related to Dothideomycetes
Author: C. Ruibal, C. Gueidan, L. Selbmann, A.A. Gorbushina, P.W. Crous, J.Z. Groenewald, L. Muggia, M. Grube, D. Isola, C.L. Schoch, J.T. Staley, F. Lutzoni, G.S. de Hoog
Journal: Studies in Mycology
Year: 2009
View Abstract | Full Paper  (1,228 KB)

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1)Title: A flow-lane incubator for studying freshwater and marine phototrophic biofilms
Author: Barbara Zippel, Jan Rijstenbil, Thomas R. Neu
Journal: Journal of Microbiological Methods
Year: 2007
View Abstract | Full Paper  (912 KB)

2)Title: a microbial signal transduction database
Author: Luke E. Ulrich1, Igor B. Zhulin
Journal: Nucleic Acids Research
Year: 2007
View Abstract | Full Paper  (610 KB)

3)Title: An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy
Author: Keith Knapp Yi-Ping Phoebe Chen
Journal: Nucleic Acids Research
Year: 2007
View Abstract | Full Paper  (498 KB)

4)Title: Analysis of Storage Lipid Accumulation in Alcanivorax borkumensis: Evidence for Alternative Triacylglycerol Biosynthesis Routes in Bacteria
Author: Rainer Kalscheuer, Tim Stöveken,, Ursula Malkus, Rudolf Reichelt, Peter N. Golyshin, Julia S. Sabirova, Manuel Ferrer, Kenneth N. Timmis, Alexander Steinbüchel
Journal: Journal of Bacteriology
Year: 2007
View Abstract | Full Paper Request

5)Title: Biopolitics and the molecularization of life
Author: Bruce Braun
Journal: cultural geographies
Year: 2007
View Abstract | Full Paper  (420 KB)


6)Title: Diversity of Archaea in Marine Sediments from Skan Bay, Alaska, Including Cultivated Methanogens, and Description of Methanogenium boonei sp. nov.
Author: Melissa M. Kendal, George D. Wardlaw, Chin F. Tang, Adam S. Bonin, Yitai Liu, David L. Valentine
Journal: Applied and Environmental Microbiology
Year: 2007
View Abstract | Full Paper Request

7)Title: DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists
Author: M. Alex Smith, D. Monty Wood, Daniel H. Janzen, Winnie Hallwachs Paul D. N. Hebert
Journal: PNAS
Year: 2007
View Abstract | Full Paper  (1,049 KB)

8)Title: Hierarchical classification of functionally equivalent genes in prokaryotes
Author: Hongwei Wu, Fenglou Mao, Victor Olman Ying Xu
Journal: Nucleic Acids Research
Year: 2007
View Abstract | Full Paper  (5,464 KB)

9)Title: MEGAN analysis of metagenomic data
Author: Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster
Journal: Genome Research
Year: 2007
View Abstract | Full Paper  (1,305 KB)

10)Title: Pseudomonas brassicacearum strain Am3 containing 1-aminocyclopropane-1-carboxylate deaminase can show both pathogenic and growth-promoting properties in its interaction with tomato
Author: A. A. Belimov, I. C. Dodd, V. I. Safronova, N. Hontzeas, W. J. Davies
Journal: Journal of Experimental Botany
Year: 2007
View Abstract | Full Paper  (698 KB)

11)Title: Serological Cross-Reactivity between Different Chlamydia-Like Organisms
Author: Nicola Casson, José M. Entenza, Gilbert Greub
Journal: Journal of Clinical Microbiology
Year: 2007
View Abstract | Full Paper Request

12)Title: Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
Author: Philip Toukach, Hiren J Joshi, Rene´ Ranzinger, Yuri Knirel Claus-W. von der Lieth
Journal: Nucleic Acids Research
Year: 2007
View Abstract | Full Paper  (2,785 KB)

13)Title: Species-Specific Secondary Metabolite Production in Marine Actinomycetes of the Genus Salinispora
Author: Paul R. Jensen, Philip G. Williams, Dong-Chan Oh, Lisa Zeigler, William Fenical
Journal: Applied and Environmental Microbiology
Year: 2007
View Abstract | Full Paper Request

14)Title: Synthetic Consolidants Attacked by Melanin-Producing Fungi: Case Study of the Biodeterioration of Milan (Italy) Cathedral Marble Treated with Acrylics
Author: Francesca Cappitelli, Joshua D. Nosanchuk, Arturo Casadeval Lucia Toniolo, Lorenzo Brusetti, Sofia Florio, Pamela Principi, Sara Borin, Claudia Sorlini
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2007
View Abstract | Full Paper Request

15)Title: The Lipopolysaccharide of Sinorhizobium meliloti Suppresses Defense-Associated Gene Expression in Cell Cultures of the Host Plant Medicago truncatula1[W][OA]
Author: Verena Tellstrom, Bjorn Usadel, Oliver Thimm, Mark Stitt, Helge Kuster, Karsten Niehaus
Journal: Plant Physiology
Year: 2007
View Abstract | Full Paper  (1,056 KB)

16)Title: The Mi-9 Gene from Solanum arcanum Conferring Heat-Stable Resistance to Root-Knot Nematodes Is a Homolog of Mi-11[W][OA]
Author: Barbara Jablonska, Jetty S.S. Ammiraju, Kishor K. Bhattarai, Sophie Mantelin, Oscar Martinez de Ilarduya, Philip A. Roberts,Isgouhi Kaloshian
Journal: Plant Physiology
Year: 2007
View Abstract | Full Paper  (467 KB)

17)Title: Vertical Transmission of Diverse Microbes in the Tropical Sponge Corticium sp.
Author: Koty H. Sharp,Boreth Eam, D. John Faulkner,MargoG. Haygood
Journal: Applied and Environmental Microbiology
Year: 2007
View Abstract | Full Paper Request

 

 

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