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Microbial Ecology

Ecology is the scientific study of how living things interact with each other and their natural environment, structure and functions of ecosystems. Ecology is essential in providing the information on how the world works. Ecology is an interdisciplinary field that includes biology and Earth scienceIt also provides facts on the interdependence between the natural world and people. A better understanding of ecological systems can help us understand the global and regional consequences of competition among humans for the scarce natural resources that support us. Listed below are different types of ecology. There are different types of ecology such as Organismal /physiological/ behavioral ecology., Population ecology, Community Ecology, Ecosystem Ecology etc. Interesting facts and research articles covering these  ecosystem, are included under General Ecology data base.

 

 

 

1)Title: Bacterial ecology of artisanal Minas cheeses assessed by culture-dependent and -independent methods
Author: Luana Martins Perin, Maria Luisa Savo Sardaro, Luís Augusto Nero, Erasmo Neviani, Monica Gatti
Journal: Food Microbiology
Year: 2017
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2)Title: Changes in soil microbial response across year following a wildfire in tropical dry forest
Author: Ashutosh Kumar Singh, Meenakshi Kushwaha, Apurva Rai, Nandita Singh
Journal: Bioresource Technology
Year: 2017
View Abstract v

3)Title: Characterizing and contrasting the microbial ecology of laboratory and full-scale EBPR systems cultured on synthetic and real wastewaters
Author: Benjamin J. Thwaites, Petra Reeve, Nirmala Dinesh, Michael D. Short, Ben van den Akker
Journal: Water Research
Year: 2017
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4)Title: Ecological and conventional viticulture gives rise to distinct fungal and bacterial microbial communities in vineyard soils
Author: M. Likar, B. Stres, D. Rusjan, M. Potisek, M. Regvar
Journal: Applied Soil Ecology
Year: 2017
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5)Title: Effect of advanced oxidation on N-nitrosodimethylamine (NDMA) formation and microbial ecology during pilot-scale biological activated carbon filtration
Author: Dong Li, Ben Stanford, Eric Dickenson, Wendell O. Khunjar, Carissa L. Homme, Erik J. Rosenfeldt, Jonathan O. Sharp
Journal: Water Research
Year: 2017
View Abstract | Full Paper Request

6)Title: Effect of gaseous mercury on nitric oxide removal performance and microbial community of a hybrid catalytic membrane biofilm reactor
Author: Changting Wang, Xinquan Zhao, Hongbiao Zi, Lei Hu, Luji Ade, Genxu Wang, Manuel Lerdau
Journal: Chemical Engineering Journal
Year: 2017
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7)Title: Effects of niacin on ruminal microbial ecology of cattle under high-concentrate condition
Author: Zhigang Wang, Yunpeng Su, Ying Zhang, Huosheng Guo, Dongfang Meng, Yang Wang
Journal: Animal Nutrition
Year: 2017
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8)Title: Gardnerella vaginalis diversity and ecology in relation to vaginal symptoms
Author: John J. Schellenberg, Mo H. Patterson, Janet E. Hill
Journal: Research in Microbiology
Year: 2017
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9)Title: Impact of sulfadiazine on performance and microbial community of a sequencing batch biofilm reactor treating synthetic mariculture wastewater
Author: Zhiwei Li, Qingbo Chang, Shanshan Li, Mengchun Gao, Zonglian She, Liang Guo, Yangguo Zhao, Chunji Jin, Dong Zheng, Qiaoyan Xu
Journal: Bioresource Technology
Year: 2017
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10)Title: Microbial Ecology and Process Technology of Sourdough Fermentation
Author: Luc De Vuyst, Simon Van Kerrebroeck, Frédéric Leroy
Journal: Advances in Applied Microbiology
Year: 2017
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11)Title: Microbial population dynamics in continuous anaerobic digester systems during start up, stable conditions and recovery after starvation
Author: Nadieh de Jonge, Veronica Moset, Henrik Bjarne Møller, Jeppe Lund Nielsen
Journal: Bioresource Technology
Year: 2017
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12)Title: Mobilisation of microbial indicators, microbial source tracking markers and pathogens after rainfall events
Author: Cristina García-Aljaro, Julia Martín-Díaz, Enric Viñas-Balada, William Calero-Cáceres, Francisco Lucena, Anicet R. Blanch
Journal: Water Research
Year: 2017
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13)Title: Pyrosequencing-based assessment of microbial community shifts in leachate from animal carcass burial lysimeter
Author: Hyun Young Kim, Jiyoung Seo, Tae-Hun Kim, Bomi Shim, Seok Mun Cha, Seungho Yu
Journal: Science of The Total Environment
Year: 2017
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14)Title: The effect of simulated warming on root dynamics and soil microbial community in an alpine meadow of the Qinghai-Tibet Plateau
Author: Ashutosh Kumar Singh, Meenakshi Kushwaha, Apurva Rai, Nandita Singh
Journal: Applied Soil Ecology
Year: 2017
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15)Title: Unraveling microbial structure and diversity of activated sludge in a full-scale simultaneous nitrogen and phosphorus removal plant using metagenomic sequencing
Author: Jianhua Guo, Bing-Jie Ni, Xiaoyu Han, Xueming Chen, Philip Bond, Yongzhen Peng, Zhiguo Yuan
Journal: Enzyme and Microbial Technology
Year: 2017
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16)Title: Winter ecology of a subalpine grassland: Effects of snow removal on soil respiration, microbial structure and function
Author: Konstantin Gavazov, Johannes Ingrisch, Roland Hasibeder, Robert T.E. Mills, Alexandre Buttler, Gerd Gleixner, Jukka Pumpanen, Michael Bahn
Journal: Science of The Total Environment
Year: 2017
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1)Title: Nitrification inhibition by hexavalent chromium Cr(VI) – Microbial ecology, gene expression and off-gas emissions
Author: Young Mo Kim, Hongkeun Park, Kartik Chandran
Journal: Water Research
Year: 2016
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2)Title: Microbial community structure and its temporal changes in Rehmannia glutinosa rhizospheric soils monocultured for different years
Author: Linkun Wu, Hongmiao Wu, Jun Chen, Juanying Wang, Wenxiong Lin
Journal: European Journal of Soil Biology
Year: 2016
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3)Title: Kinetics and microbial ecology of batch sulfidogenic bioreactors for co-treatment of municipal wastewater and acid mine drainage
Author: Dongyang Deng, Jennifer L. Weidhaas, Lian-Shin Lin
Journal: Journal of Hazardous Materials
Year: 2016
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4)Title: Functional implications of the pH-trait distribution of the microbial community in a re-inoculation experiment across a pH gradient
Author: Gema Bárcenas-Moreno, Erland Bååth, Johannes Rousk
Journal: Soil Biology and Biochemistry
Year: 2016
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5)Title: Discrimination of post-harvest coffee processing methods by microbial ecology analyses
Author: Yasmine Hamdouche, Jean Christophe Meile, D. Nadège Nganou, Noël Durand, Corinne Teyssier, Didier Montet
Journal: Food Control
Year: 2016
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6)Title: Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi
Author: Hans-Peter Grossart, Christian Wurzbacher, Timothy Y. James, Maiko Kagami
Journal: Fungal Ecology
Year: 2016
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7)Title: Microbial changes of natural milk cultures for mozzarella cheese during repeated propagation cycles
Author: Angela Guidone, Annamaria Ricciardi, Assunta Romaniello, Maria Grazia Bonomo, Giuseppe Morone, Teresa Zotta, Eugenio Parente
Journal: Food Science and Technology
Year: 2016
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8)Title: Coal mining practices reduce the microbial biomass, richness and diversity of soil
Author: Patricia Dorr de Quadros, Kateryna Zhalnina, Austin G. Davis-Richardson, Jennifer C. Drew, Fátima B. Menezes, Flávio A.de O. Camargo, Eric W. Triplett
Journal: Applied Soil Ecology
Year: 2016
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9)Title: Start-up phase of an anaerobic full-scale farm reactor – Appearance of mesophilic anaerobic conditions and establishment of the methanogenic microbial community
Author: Xavier Goux, Magdalena Calusinska, Marie Fossépré, Emile Benizri, Philippe Delfosse
Journal: Bioresource Technology
Year: 2016
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10)Title: Reaction-centric modeling of microbial ecosystems
Author: Stilianos Louca, Michael Doebeli
Journal: Ecological Modelling
Year: 2016
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11)Title: Editorial overview: Remapping the body of the world: Exploring interactions at the interface of microbial ecology, biological engineering and information science
Author: Steven J. Hallam, Mónica Vásquez
Journal: Current Opinion in Microbiology
Year: 2016
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12)Title: Pastures to woodlands: changes in soil microbial communities and carbon following reforestation
Author: T.R. Cavagnaro, S.C. Cunningham, S. Fitzpatrick
Journal: Applied Soil Ecology
Year: 2016
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13)Title: Aquatic fungi: targeting the forgotten in microbial ecology
Author: Hans-Peter Grossart, Keilor Rojas-Jimenez
Journal: Current Opinion in Microbiology
Year: 2016
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14)Title: The information science of microbial ecology
Author: Aria S Hahn, Kishori M Konwar, Stilianos Louca, Niels W Hanson, Steven J Hallam
Journal: Current Opinion in Microbiology
Year: 2016
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15)Title: Empirical links between trace metal cycling and marine microbial ecology during a large perturbation to Earth's carbon cycle
Author: Jeremy D. Owens, Christopher T. Reinhard, Megan Rohrssen, Gordon D. Love, Timothy W. Lyons
Journal: Earth and Planetary Science Letters
Year: 2016
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16)Title: Microbial ecology involved in the ripening of naturally fermented llama meat sausages. A focus on lactobacilli diversity
Author: Cecilia Fontana, Daniela Bassi, Constanza López, Vincenza Pisacane, Maria Claudia Otero, Edoardo Puglisi, Annalisa Rebecchi, Pier Sandro Cocconcelli, Graciela Vignolo
Journal: International Journal of Food Microbiology
Year: 2016
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17)Title: Microbial Ecology and Evolution in the Acid Mine Drainage Model System
Author: Li-Nan Huang, Jia-Liang Kuang, Wen-Sheng Shu
Journal: Trends in Microbiology
Year: 2016
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18)Title: Perspectives in mathematical modelling for microbial ecology
Author: M.J. Wade, J. Harmand, B. Benyahia, T. Bouchez, S. Chaillou, B. Cloez, J.-J. Godon, B. Moussa Boudjemaa, A. Rapaport, h, T. Sari, R. Arditi, C. Lobry
Journal: Trends in Microbiology
Year: 2016
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19)Title: Ecology-types determine physicochemical properties and microbial communities of sediments obtained along the Songhua River
Author: Zhigang Wang, Yunpeng Su, Ying Zhang, Huosheng Guo, Dongfang Meng, Yang Wang
Journal: Trends in Microbiology
Year: 2016
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1)Title: Differentiation in the microbial ecology and activity of suspended and attached bacteria in a nitritation-anammox process
Author: Hongkeun Park, Suneethi Sundar, Yiwei Ma and Kartik Chandran
Journal: Biotechnology and Bioengineering
Year: 2015
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2)Title: Influence of Leaf Quality in Microbial Decomposition in a Headwater Stream in the Brazilian Cerrado: a 1-Year Study
Author: M. A. Sales, J. F. Gonçalves Jr., J. S. Dahora, A. O. Medeiros
Journal: Microbial Ecology
Year: 2015
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3)Title: Redox gradients in distribution systems influence water quality, corrosion, and microbial ecology
Author: Sheldon Masters, Hong Wang, Amy Pruden, Marc A. Edwards
Journal: Water Research
Year: 2015
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4)Title: Evidence of Novel Phylogenetic Lineages of Methanogenic Archaea from Hypersaline Microbial Mats
Author: José Q. García-Maldonado, Brad M. Bebout, R. Craig Everroad, Alejandro López-Cortés
Journal: Microbial Ecology
Year: 2015
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5)Title: A novel experimental system for the study of microbial ecology and mineral leaching within a simulated agglomerate-scale heap bioleaching system
Author: Elaine Govender, Christopher G. Bryan1, Susan T.L. Harrison
Journal: Biochemical Engineering Journal
Year: 2015
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6)Title: Soil Moisture and pH Control Relative Contributions of Fungi and Bacteria to N2O Production
Author: Huaihai Chen, Nape V. Mothapo, Wei Shi
Journal: Microbial Ecology
Year: 2015
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7)Title: Long-term consequences of disturbances on reproductive strategies of the rare epiphytic lichen Lobaria pulmonaria: clonality a gift and a curse
Author: Garima Singh , Francesco Dal Grande , Silke Werth , Christoph Scheidegger
Journal: FEMS Microbiology Ecology
Year: 2015
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8)Title: Effect of monochloramine treatment on the microbial ecology of Legionella and associated bacterial populations in a hospital hot water system
Author: Julianne L. Baron, J. Kirk Harris, Eric P. Holinger, Scott Dudab, Mark J. Stevens, Charles E. Robertson, Kimberly A. Ross, Norman R. Pace, Janet E. Stout
Journal: Systematic and Applied Microbiology
Year: 2015
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9)Title: Microbial Associates of the Vine Mealybug Planococcus ficus (Hemiptera: Pseudococcidae) under Different Rearing Conditions
Author: Lilach Iasur-Kruh, Leena Taha-Salaime, Wyatt E. Robinson, Rakefet Sharon, Samir Droby, Steve J. Perlman, Einat Zchori-Fein
Journal: Microbial Ecology
Year: 2015
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10)Title: Microbial ecology Sharing is caring
Author: Claudio Nunes-Alves
Journal: Nature Reviews Microbiology
Year: 2015
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11)Title: Microbial ecology Setting a trap
Author: Andrea Du Toit
Journal: Nature Reviews Microbiology
Year: 2015
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12)Title: Modeling in Microbial Ecology
Author: Jean-Christophe Poggiale, Philippe Dantigny, Rutger De Wit, Christian Steinberg
Journal: Environmental Microbiology: Fundamentals and Applications
Year: 2015
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13)Title: The pig gut microbial diversity: Understanding the pig gut microbial ecology through the next generation high throughput sequencing
Author: Hyeun Bum Kim, Richard E. Isaacson
Journal: Veterinary Microbiology
Year: 2015
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14)Title: From commensalism to mutualism: integrating the microbial ecology, building science, and indoor air communities to advance research on the indoor microbiome
Author: Brent Stephens, Rachel I Adams, Seema Bhangar, Kyle Bibby and Michael S Waring
Journal: Indoor Air
Year: 2015
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15)Title: Microbial ecology of hot desert edaphic systems
Author: Thulani P. Makhalanyane, Angel Valverde, Eoin Gunnigle, Aline Frossard, Jean-Baptiste Ramond, Don A. Cowan
Journal: FEMS Microbiology Reviews
Year: 2015
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16)Title: Applied Microbial Ecology and Bioremediation
Author: Jean-Claude Bertrand, Pierre Doumenq, Rémy Guyoneaud, Benoit Marrot, Fabrice Martin-Laurent, Robert Matheron, Philippe Moulin, Guy Soulas
Journal: Environmental Microbiology: Fundamentals and Applications
Year: 2015
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17)Title: Maternal obesity alters gut microbial ecology in offspring of NOD mice
Author: Meijun Zhu, Yifei Kang and Min Du
Journal: The FASEB Journal
Year: 2015
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18)Title: Assessing Fungal Community Structure from Mineral Surfaces in Kartchner Caverns Using Multiplexed 454 Pyrosequencing
Author: Michael Joe Vaughan, Will Nelson, Carol Soderlund, Raina M. Maier, Barry M. Pryor
Journal: Microbial Ecology
Year: 2015
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19)Title: Potential applications of soil microbial ecology and next-generation sequencing in criminal investigations
Author: Sheree J. Finley, M. Eric Benbow, Gulnaz T. Javan
Journal: Applied Soil Ecology
Year: 2015
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20)Title: New perspectives in benthic deep-sea microbial ecology
Author: Cinzia Corinaldesi
Journal: Front. Mar. Sci
Year: 2015
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21)Title: Microbe-Assisted Phytoremediation of Hydrocarbons in Estuarine Environments
Author:  Vanessa Oliveira, Newton C. M. Gomes, Adelaide Almeida, Artur M. S. Silva, Helena Silva, Ângela Cunha
Journal: Microbial Ecology
Year: 2015
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22)Title: Discriminating organic and conventional foods by analysis of their microbial ecology: An application on fruits
Author: Céline Bigot, Jean-Christophe Meile, André Kapitan, Didier Montet
Journal: Food Control
Year: 2015
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23)Title: Natural environments, ancestral diets, and microbial ecology: is there a modern “paleo-deficit disorder”?
Author: Alan C Logan , Martin A Katzman and Vicent Balanzá-Martínez
Journal: Journal of Physiological Anthropology
Year: 2015
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24)Title: Effects of Forest Management Practices in Temperate Beech Forests on Bacterial and Fungal Communities Involved in Leaf Litter Degradation
Author: Witoon Purahong, Danuta Kapturska, Marek J. Pecyna, Katalee Jariyavidyanont, Jennifer Kaunzner, Kantida Juncheed, Tanaporn Uengwetwanit, Renate Rudloff, Elke Schulz, Martin Hofrichter
Journal: Microbial Ecology
Year: 2015
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25)Title: Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria
Author: Aurélie Deveau, Matthieu Barret, Abdala G. Diedhiou, Johan Leveau, Wietse de Boer, Francis Martin, Alain Sarniguet, Pascale Frey-Klett
Journal: Microbial Ecology
Year: 2015
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26)Title: Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients
Author: Daniel McDonald, Mady Hornig, Catherine Lozupone, Justine Debelius, Jack A. Gilbert, and Rob Knight
Journal: Microb Ecol Health Dis
Year: 2015
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27)Title: The Microbiome of Field-Caught and Laboratory-Adapted Australian Tephritid Fruit Fly Species with Different Host Plant Use and Specialisation
Author: J. L. Morrow, M. Frommer, D. C. A. Shearman, M. Riegler
Journal: Microbial Ecology
Year: 2015
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28)Title: Altitudinal Distribution Patterns of Soil Bacterial and Archaeal Communities Along Mt. Shegyla on the Tibetan Plateau
Author: Jun-Tao Wang, Peng Cao, Hang-Wei Hu, Jing Li, Li-Li Han, Li-Mei Zhang, Yuan-Ming Zheng, Ji-Zheng He
Journal: Microbial Ecology
Year: 2015
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29)Title: Multiple Symbiodinium Strains Are Hosted by the Brazilian Endemic Corals Mussismilia spp
Author: Arthur W. Silva-Lima, Juline M. Walter, Gizele D. Garcia, Naiara Ramires, Glaucia Ank, Pedro M. Meirelles, Alberto F. Nobrega, Inacio D. Siva-Neto, Rodrigo L. Moura, Paulo S. Salomon
Journal: Microbial Ecology
Year: 2015
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30)Title: Effect of P-limitation on prokaryotic and viral production in surface waters of the Northwestern Mediterranean Sea
Author: Chiaki Motegi, Karl Kaiser, Ronald Benner and Markus G. Weinbauer
Journal: Microbial Ecology
Year: 2015
View Abstract | Full Paper Request

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1)Title: Ecology of blood stream infection and antibiotic resistance in intensive care unit at a tertiary care hospital in North India
Author: Chand Wattal, Reena Raveendran, Neeraj Goel, Jaswinder Kaur Oberoi, Brijendra Kumar Rao
Journal: The Brazilian Journal of Infectious Diseases
Year: 2014
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2)Title: Marine coastal sediments microbial hydrocarbon degradation processes contribution of experimental ecology in the omics’era
Author: Cristiana Cravo-Laureau and Robert Duran
Journal: Frontiers in Microbiology
Year: 2014
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3)Title: Merging chemical ecology with bacterial genome mining for secondary metabolite discovery
Author: Maria I. Vizcaino, Xun Guo, Jason M. Crawford
Journal: Journal of Industrial Microbiology & Biotechnology
Year: 2014
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4)Title: Microbial ecology of chlorinated solvent biodegradation
Author: Maude M. David, Sebastien Cecillon, Brett M. Warne, Emmanuel Prestat, Janet K. Jansson, Timothy M. Vogel
Journal: Environmental Microbiology
Year: 2014
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5)Title: Modeled diversity effects on microbial ecosystem functions of primary production, nutrient uptake, and remineralization
Author: Nicole L. Goebel, Christopher A. Edwards, Michael J. Follows, Jonathan P. Zehr
Journal: Ecology
Year: 2014
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6)Title: Soil microorganisms respond to five years of climate change manipulations and elevated atmospheric CO2 in a temperate heath ecosystem
Author: Merian Skouw Haugwitz, Lasse Bergmark, Anders Priemé, Søren Christensen, Claus Beier, Anders Michelsen
Journal: Plant and Soil
Year: 2014
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7)Title: The microbial ecology of flowers: an emerging frontier in phyllosphere research
Author: Kristin Aleklett, Miranda Hart, Ashley Shade
Journal: Botany
Year: 2014
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8)Title: Turbulent Fluid Acceleration Generates Clusters of Gyrotactic Microorganisms
Author: Filippo De Lillo, Massimo Cencini, William M. Durham, Michael Barry, Roman Stocker, Eric Climent, Guido Boffetta
Journal: Phys. Rev. Lett
Year: 2014
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9)Title: Extracellular hydrolytic activities of halophilic microorganisms isolated from Balta Alba salt lake
Author: Simona Neagu, Madalin Enache, Roxana Cojoc
Journal: Romanian Biotechnological Letters
Year: 2014
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10)Title: Microorganisms persist at record depths in the subseafloor of the Canterbury Basin
Author: Maria-Cristina Ciobanu, Gaëtan Burgaud, Alexis Dufresne, Anja Breuker, Vanessa Rédou, Sarah Ben Maamar, Frédéric Gaboyer, Odile Vandenabeele-Trambouze, Julius Sebastian Lipp, Axel Schippers, Philippe Vandenkoornhuyse, Georges Barbier, Mohamed Jebbar, Anne Godfroy, Karine Alain
Journal: The ISME Journal
Year: 2014
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11)Title: Autecology of microorganisms of coastal ecosystems of the dead sea
Author: Victoria Romanovskaya, Galina Gladka, Oleksandr Tashyrev
Journal: Ecological Engineering and Environment Protection
Year: 2014
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12)Title: Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics’era
Author: Cristiana Cravo-Laureau, Robert Duran
Journal: Frontiers in Microbiology
Year: 2014
View Abstract | Full Paper Request

13)Title: Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco
Author: Juliana Almario, Daniel Muller, Geneviève Défago, Yvan Moënne-Loccoz
Journal: Environmental Microbiology
Year: 2014
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14)Title: Explaining microbial genomic diversity in light of evolutionary ecology
Author: Otto X. Cordero, Martin F. Polz
Journal: Nature Reviews Microbiology
Year: 2014
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15)Title: Implications of streamlining theory for microbial ecology
Author: Stephen J Giovannoni, J Cameron Thrash, Ben Temperton
Journal: The ISME Journal
Year: 2014
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16)Title: Microbial Ecology: Finding Structure in the Rare Biosphere
Author: Charles Bachy, Alexandra Z. Worden
Journal: Current Biology
Year: 2014
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17)Title: Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef
Author: Jessica Tout, Thomas C. Jeffries, Nicole S. Webster, Roman Stocker, Peter J. Ralph, Justin R. Seymour
Journal: Microbial Ecology
Year: 2014
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18)Title: Microbial Ecology of Geothermal Habitats in Antarctica
Author: Craig W. Herbold, Ian R. McDonald, S. Craig Cary
Journal: Antarctic Terrestrial Microbiology
Year: 2014
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19)Title: Airborne Bacterial Populations Above Desert Soils of the McMurdo Dry Valleys, Antarctica
Author: Craig W. Herbold, Ian R. McDonald, S. Craig Cary
Journal: Microbial Ecology
Year: 2014
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20)Title: Microbial ecology of arsenic-mobilizing Cambodian sediments: lithological controls uncovered by stable-isotope probing
Author: Marina Héry, Athanasios Rizoulis, Hervé Sanguin, David A. Cooke, Richard D. Pancost, David A. Polya1and Jonathan R. Lloyd
Journal: Environmental Microbiology
Year: 2014
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21)Title: Reactor performance and microbial ecology of a nitritation membrane bioreactor
Author: Luwei Shen, Yuan Yao, Fangang Meng
Journal: Journal of Membrane Science
Year: 2014
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22)Title: Dynamics of microbial ecology during cocoa fermentation and drying: Towards the identification of molecular markers
Author: Yasmine Hamdouche, Tagro Guehi, Noel Durand, Kra Brou Didier Kedjebo, Didier Montet, Jean Christophe Meile
Journal: Food Control
Year: 2014
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23)Title: Microbial ecology, bacterial pathogens, and antibiotic resistant genes in swine manure wastewater as influenced by three swine management systems
Author: John P. Brooks, Ardeshir Adeli, Michael R. McLaughlin
Journal: Water Research
Year: 2014
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24)Title: Microbial ecology of sourdough fermentations: Diverse or uniform
Author: L. De Vuyst, S. Van Kerrebroeck, H. Harth, G. Huys, H.-M. Daniel, S. Weckx
Journal: Water Research
Year: 2014
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25)Title: Analysis of the microbial ecology between Helicobacter pylori and the gastric microbiota of Mongolian gerbils
Author: Cynthia Zaman, Takako Osaki, Tomoko Hanawa, Hideo Yonezawa, Satoshi Kurata, Shigeru Kamiya
Journal: J Med Microbiol
Year: 2014
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26)Title: The microbial ecology of flowers: an emerging frontier in phyllosphere research
Author: Kristin Aleklett, Miranda Hart, Ashley Shade
Journal: Botany
Year: 2014
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27)Title: Temporal Changes in Microbial Ecology and Geochemistry in Produced Water from Hydraulically Fractured Marcellus Shale Gas Wells
Author: Maryam A. Cluff, Angela Hartsock, Jean D. MacRae, Kimberly Carter, Paula J. Mouser
Journal: Environ. Sci. Technol
Year: 2014
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28)Title: CO2 concentration and pH alters subsurface microbial ecology at reservoir temperature and pressure
Author: Djuna M. Gulliver, Gregory V. Lowry, Kelvin B. Gregory
Journal: RSC Adv
Year: 2014
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29)Title: Microbial Ecology and Diversity : Impact of Diet in Shaping Gut Microbiota Revealed by a Comparative Study in Infants During the First Six Months of Life
Author: Wen Guang Fan, Gui Cheng Huo, Xiao Min Li, Li Jie Yang, Cui Cui Duan
Journal: Journal of Microbiology and Biotechnology
Year: 2014
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30)Title: Influence of Shrub Encroachment on the Soil Microbial Community Composition of Remnant Hill Prairies
Author: Anthony C. Yannarell, Sarah E. Menning, Alyssa M. Beck
Journal: Microbial Ecology
Year: 2014
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31)Title: Implications of streamlining theory for microbial ecology
Author: Stephen J Giovannoni, J Cameron Thrash and Ben Temperton
Journal: The ISME Journal
Year: 2014
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32)Title: A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses
Author: Pier Luigi Buttigieg, Alban Ramette
Journal: FEMS Microbiology Ecology
Year: 2014
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33)Title: Metaproteomic Survey of Six Aquatic Habitats: Discovering the Identities of Microbial Populations Active in Biogeochemical Cycling
Author: Buck T. Hanson, Ian Hewson, Eugene L. Madsen
Journal: Microbial Ecology
Year: 2014
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34)Title: Improved Bacteriophage Genome Data is Necessary for Integrating Viral and Bacterial Ecology
Author: Kyle Bibby
Journal: Microbial Ecology
Year: 2014
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35)Title: Shift in the Microbial Ecology of a Hospital Hot Water System following the Introduction of an On-Site Monochloramine Disinfection System
Author: Julianne L. Baron, Amit Vikram, Scott Duda, Janet E. Stout, Kyle Bibby
Journal: PLOS ONE
Year: 2014
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36)Title: Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
Author: Timothy J Williams, Michelle A Allen, Matthew Z DeMaere, Nikos C Kyrpides, Susannah G Tringe, Tanja Woyke and Ricardo Cavicchioli
Journal: The ISME Journal
Year: 2014
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37)Title: COP9 regulates intestinal microbial ecology and susceptibility to colitis (MUC4P.839)
Author: Baomei Wang, Zhong-bin Deng, Gerald Dryden, Donald Miller, Ning Wei and Huang-Ge Zhang
Journal: The Journal of Immunology
Year: 2014
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38)Title: Short-Term Precipitation Exclusion Alters Microbial Responses to Soil Moisture in a Wet Tropical Forest
Author: Bonnie G. Waring, Christine V. Hawkes
Journal: Microbial Ecology
Year: 2014
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39)Title: The microbial ecology of permafrost
Author: Janet K. Jansson & Neslihan Tas
Journal: Nature Reviews Microbiology
Year: 2014
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40)Title: Cycloheximide prevents the de novo polypeptide synthesis required to recover from acetylene inhibition in Nitrosopumilus maritimus
Author: Vajrala N, Bottomley PJ, Stahl DA, Arp DJ, Sayavedra-Soto LA
Journal: FEMS Microbiology Ecology
Year: 2014
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41)Title: Influence of Land Use Intensity on the Diversity of Ammonia Oxidizing Bacteria and Archaea in Soils from Grassland Ecosystems
Author: Annabel Meyer, Andreas Focks, Viviane Radl, Gerhard Welzl, Ingo Schöning, Michael Schloter
Journal: Microbial Ecology
Year: 2014
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42)Title: Response of Sphagnum Peatland Testate Amoebae to a 1-Year Transplantation Experiment Along an Artificial Hydrological Gradient
Author: Katarzyna Marcisz, Bertrand Fournier, Daniel Gilbert, Mariusz Lamentowicz, Edward A. D. Mitchell
Journal: Microbial Ecology
Year: 2014
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43)Title: Microfluidics Expanding the Frontiers of Microbial Ecology
Author: Roberto Rusconi, Melissa Garren, and Roman Stocker
Journal: Annual Review of Biophysics
Year: 2014
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44)Title: Methodologies for the Study of Microbial Ecology in Fermented Sausages
Author: Fidel Toldrá, Y. H. Hui, Iciar Astiasarán, Joseph G. Sebranek and Règine Talon
Journal: Handbook of Fermented Meat and Poultry
Year: 2014
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45)Title: The Bio-Community Perl toolkit for microbial ecology
Author: Florent E. Angly, Christopher J. Fields and Gene W. Tyson
Journal: Bioinformatics
Year: 2014
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46)Title: Vitamin B12 as a Modulator of Gut Microbial Ecology
Author: Patrick H. Degnan, Michiko E. Taga, Andrew L. Goodman
Journal: Cell Metabolism
Year: 2014
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47)Title: Causal relationship between microbial ecology dynamics and proteolysis during manufacture and ripening of Canestrato Pugliese PDO cheese
Author: Ilaria De Pasquale, Maria Calasso, Leonardo Mancini, Danilo Ercolini, Antonietta La Storia, Maria De Angelis, Raffaella Di Cagno and Marco Gobbetti
Journal: Applied and Environmental Microbiology
Year: 2014
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48)Title: Microbial Ecology of Geothermal Habitats in Antarctica
Author: Craig W. Herbold, Ian R. McDonald, S. Craig Cary
Journal: Antarctic Terrestrial Microbiology
Year: 2014
View Abstract

49)Title: Influence of transitional states on the microbial ecology of anaerobic digesters treating solid wastes
Author: Leticia Regueiro, Patricia Veiga, Mónica Figueroa, Juan M. Lema, Marta Carballa
Journal: Applied Microbiology and Biotechnology
Year: 2014
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50)Title: Microbial Ecology Dynamics Reveal a Succession in the Core Microbiota Involved in the Ripening of Pasta Filata Caciocavallo Pugliese Cheese
Author: Ilaria De Pasquale, Raffaella Di Cagno, Solange Buchin, Maria De Angelis and Marco Gobbetti
Journal: Applied and Environmental Microbiology
Year: 2014
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51)Title: Microbial Ecology: Finding Structure in the Rare Biosphere
Author: Charles Bachy, Alexandra Z. Worden
Journal: Current Biology
Year: 2014
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52)Title: Airborne Bacterial Populations Above Desert Soils of the McMurdo Dry Valleys, Antarctica
Author: Eric M. Bottos, Anthony C. Woo, Peyman Zawar-Reza, Stephen B. Pointing, Stephen C. Cary
Journal: Microbial Ecology
Year: 2014
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53)Title: Outcomes of Infections of Sea Anemone Aiptasia pallida with Vibrio spp. Pathogenic to Corals
Author: William J. Zaragoza, Cory J. Krediet, Julie L. Meyer, Gabriela Canas, Kim B. Ritchie, Max Teplitski
Journal: Microbial Ecology
Year: 2014
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54)Title: The Temporal Scaling of Bacterioplankton Composition: High Turnover and Predictability during Shrimp Cultivation
Author: Jinbo Xiong, Jianlin Zhu, Kai Wang, Xin Wang, Xiansen Ye, Lian Liu, Qunfen Zhao, Manhua Hou, Linglin Qiuqian, Demin Zhang
Journal: Microbial Ecology
Year: 2014
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55)Title: Spatial Variation in the Bacterial and Denitrifying Bacterial Community in a Biofilter Treating Subsurface Agricultural Drainage
Author: J. Malia Andrus, Matthew D. Porter, Luis F. Rodríguez, Timothy Kuehlhorn, Richard A. C. Cooke, Yuanhui Zhang, Angela D. Kent, Julie L. Zilles
Journal: Microbial Ecology
Year: 2014
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56)Title: Refinement of biodegradation tests methodologies and the proposed utility of new microbial ecology techniques
Author: Agnieszka Kowalczyk, Timothy James Martin, Oliver Richard Price, Jason Richard Snape, Roger Albert van Egmond, Christopher James Finnegan, Hendrik Schäfer, Russell James Davenport, Gary Douglas Bending
Journal: Ecotoxicology and Environmental Safety
Year: 2014
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57)Title: Remarkable Recovery and Colonization Behaviour of Methane Oxidizing Bacteria in Soil After Disturbance Is Controlled by Methane Source Only
Author: Yao Pan, Guy C. J. Abell, Paul L. E. Bodelier, Marion Meima-Franke, Angela Sessitsch, Levente Bodrossy
Journal: Microbial Ecology
Year: 2014
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_____________________________________________________________________________________________________________

1)Title: A morpho-genetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
Author: Thorsten Stoeck, Hans-Werner Breiner, Sabine Filker, Veronika Ostermaier, Barbara Kammerlander, Bettina Sonntag
Journal: Environmental Microbiology
Year: 2013
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2)Title: Advances in monitoring environmental microbes
Author: Terry C Hazen, Andrea M Rocha, Stephen M Techtmann
Journal: Current Opinion in Biotechnology
Year: 2013
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3)Title: An efficient nonlinear finite-difference approach in the computational modeling of the dynamics of a nonlinear diffusion-reaction equation in microbial ecology
Author: J.E. Macías-Díaz, Siegfried Macías, I.E. Medina-Ramírez
Journal: Computational Biology and Chemistry
Year: 2013
View Abstract | Full Paper Request

4)Title: Assessment of shifts in microbial community structure and catabolic diversity in response to Rehmannia glutinosamonoculture
Author: Linkun Wu, Zhenfang Li, Ji Li, Muhammad Azam Khan, Weimin Huang, Zhongyi Zhang, Wenxiong Lin
Journal: Applied Soil Ecology
Year: 2013
View Abstract | Full Paper Request

5)Title: Bar-Coded Enterobacteria: An Undergraduate Microbial Ecology Laboratory Module
Author: Thao Le, James Trexel, Alexandra Brugler, Kristina Tiebel, Yukari Maezato, Brian Robertson, Paul Blum
Journal: American Journal of Educational Research
Year: 2013
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6)Title: Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
Author: Andrea R Ottesen, Antonio González Peña, James R White, James B Pettengill,Cong Li, Sarah Allard, Steven Rideout, Marc Allard, Thomas Hill, Peter Evans, Errol Strain, Steven Musser, Rob Knight and Eric Brown
Journal: BMC Microbiology
Year: 2013
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7)Title: Biofuel components change the ecology of bacterial volatile petroleum hydrocarbon degradation in aerobic sandy soil
Author: Abdulmagid Elazhari-Ali, Arvind K. Singh, Russell J. Davenport, Ian M. Head, David Werner
Journal: Environmental Pollution
Year: 2013
View Abstract | Full Paper Request

8)Title: Board-invited review: Rumen microbiology: Leading the way in microbial ecology1,2
Author: D. O. Krause, T. G. Nagaraja, A. D. G. Wright and T. R. Callaway
Journal: Journal of Animal Science
Year: 2013
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9)Title: Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. varoleifera) Evaluated through Next-Generation Sequencing Technology
Author: Samanta B. de Campos, Jung-Won Youn, Roberto Farina, Sebastian Jaenicke, Sebastian Jünemann, Rafael Szczepanowski, Anelise Beneduzi, Luciano K. Vargas, Alexander Goesmann, Volker F. Wendisch, Luciane M. P. Passaglia
Journal: Microbial Ecology
Year: 2013
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10)Title: Ecology of aerobic methanotrophs in controlling methane fluxes from wetlands
Author: Taniya Roy Chowdhury, Richard P. Dick
Journal: Applied Soil Ecology
Year: 2013
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11)Title: Effect of dam parity on litter performance, transfer of passive immunity, and progeny microbial ecology1
Author: E. E. Carney-Hinkle, H. Tran, J. W. Bundy, R. Moreno, P. S. Miller andT. E. Burkey
Journal: Journal of Animal Science
Year: 2013
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12)Title: Effect of forage conservation method on ruminal lipid metabolism and microbial ecology in lactating cows fed diets containing a 60:40 forage-to-concentrate ratio
Author: A. Halmemies-Beauchet-Filleau, P. Kairenius, S. Ahvenjärvi, L.K. Crosley, S. Muetzel, P. Huhtanen, A. Vanhatalo, V. Toivonen, R.J. Wallace, K.J. Shingfield
Journal: Journal of Dairy Science
Year: 2013
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13)Title: Effect of Intestinal Microbial Ecology on the Developing Brain
Author: Martha Douglas-Escobar, MD; Elizabeth Elliott; Josef Neu, MD
Journal: AMA Pediatrics
Year: 2013
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14)Title: Effects of dietary combinations of organic acids and medium chain fatty acids on the gastrointestinal microbial ecology and bacterial metabolites in the digestive tract of weaning piglets1
Author: J. Zentek, F. Ferrara, R. Pieper, L. Tedin, W. Meyer andW. Vahjen
Journal: Journal of Animal Science
Year: 2013
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15)Title: Effects of Different Regeneration Scenarios and Fertilizer Treatments on Soil Microbial Ecology in Reclaimed Opencast Mining Areas on the Loess Plateau, China
Author: Junjian Li, Yuanming Zheng, Junxia Yan, Hongjian Li, Xiang Wang, Jizheng He mail, Guangwei Ding
Journal: PLoS ONE
Year: 2013
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16)Title: Extreme CO2 disturbance and the resilience of soil microbial communities
Author: Jack W. McFarland, Mark P. Waldrop, Monica Haw
Journal: Soil Biology and Biochemistry
Year: 2013
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17)Title: High-Throughput Sequencing and Metagenomics: Moving Forward in the Culture-Independent Analysis of Food Microbial Ecology
Author: Danilo Ercolini
Journal: Applied and Environmental Microbiology
Year: 2013
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18)Title: Influence of Season and Plant Species on the Abundance and Diversity of Sulfate Reducing Bacteria and Ammonia Oxidizing Bacteria in Constructed Wetland Microcosms
Author: Jennifer L. Faulwetter, Mark D. Burr, Albert E. Parker, Otto R. Stein, Anne K. Camper
Journal: Microbial Ecology
Year: 2013
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19)Title: Interactions between earthworms and residues of differing quality affecting aggregate stability and microbial dynamics
Author: Salwan Al-Maliki, John Scullion
Journal: Applied Soil Ecology
Year: 2013
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20)Title: Linking molecular microbial mcology to meochemistry in a coastal hypoxic zone
Author: Brandi Kiel Reese, Heath J. Mills, Scot E. Dowd & John W. Morse
Journal: Geomicrobiology Journal
Year: 2013
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21)Title: Microbial ecology of sourdough fermentations: Diverse or uniform?
Author: L. De Vuyst, S. Van Kerrebroeck, H. Harth, G. Huys, H.-M. Daniel, S. Weckx
Journal: Food Microbiology
Year: 2013
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22)Title: Short-term effects of the herbicide napropamide on the activity and structure of the soil microbial community assessed by the multi-approach analysis
Author: Mariusz Cycon, Marcin Wójcik, Slawomir Borymski, Zofia Piotrowska-Seget
Journal: Applied Soil Ecology
Year: 2013
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23)Title: Soil microbial community response to variation in vegetation and abiotic environment in a temperate old-growth forest
Author: Erika Gömöryová, Karol Ujházy, Michal Martinák, Dušan Gömöry
Journal: Applied Soil Ecology
Year: 2013
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24)Title: Spatio-temporal variability of microbial abundance and community structure in the puddled layer of a paddy soil cultivated with wetland rice (Oryza sativa L.)
Author: Hannes Schmidt, Thilo Eickhorst
Journal: Applied Soil Ecology
Year: 2013
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25)Title: Temporal variation in surface and subsoil abundance and function of the soil microbial community in an arable soil
Author: Susanne Kramer, Sven Marhan, Heike Haslwimmer, Liliane Ruess, Ellen Kandeler
Journal: Soil Biology and Biochemistry
Year: 2013
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26)Title: The Ecology of Microbial Communities Associated with Macrocystis pyrifera
Author: Vanessa K. Michelou mail, J. Gregory Caporaso, Rob Knight, Stephen R. Palumbi
Journal: PLoS ONE
Year: 2013
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27)Title: Toward the development of microbial indicators for wetland assessment
Author: Atreyee Sims, Yanyan Zhang, Shashikanth Gajaraj, Pamela B. Brown, Zhiqiang Hu
Journal: Water Research
Year: 2013
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28)Title: Utilisation of Rep-PCR to track microbes in aerosols collected adjacent to their source, a saline lake in Victoria, Australia
Author: Chris I. Munday, Tadhg O'Loingsigh, Nigel J. Tapper, Patrick De Deckker, Gwen E. Allison
Journal: Science of the Total Environment
Year: 2013
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_____________________________________________________________________________________________________________

1)Title: Targeted Antimicrobial Treatment to Re-establish a Healthy Microbial Flora for Long-term Protection
Author: R. Eckert, R. Sullivan, W. Shi1
Journal: Advances in Dental Research
Year: 2012
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2)Title: Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities
Author: Hikaru Suenaga
Journal: Environmental microbiology
Year: 2012
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3)Title: Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils
Author: Paul L.E. Bodelier, Marie-Jose Bär-Gilissen, Marion Meima-Franke, Kees Hordijk
Journal: Ecology and Evolution
Year: 2012
View Abstract | Full Paper Request

4)Title: Spatial and temporal variability of the human microbiota
Author: L. W. Parfrey ,R. Knight
Journal: Clinical Microbiology and Infection
Year: 2012
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5)Title: Microbiota-Targeted Therapies: An Ecological Perspective
Author: Katherine P. Lemon,Gary C. Armitage, David A. Relman and Michael A. Fischbach
Journal: Science Translational Medicine
Year: 2012
View Abstract | Full Paper Request

6)Title: Molecular characterization of the microbial communities in the subcaudal gland secretion of the European badger (Meles meles)
Author: Yung Wa Sin, Christina D. Buesching, Terry Burke, David W. Macdonald
Journal: FEMS Microbiology Ecology
Year: 2012
View Abstract | Full Paper Request

7)Title: Progress on FISH probes of sludge bulking caused by filamentous bacteria
Author: WANG Ping; YU Zhisheng; QI Rong; ZHANG Hongxun
Journal: Chinese Journal of Applied & Environmental Biology
Year: 2012
View Abstract | Full Paper Request

8)Title: Reanalysis and Simulation Suggest a Phylogenetic Microarray Does Not Accurately Profile Microbial Communities
Author: David J. Midgley, Paul Greenfield, Janet M. Shaw, Yalchin Oytam Dongmei Li, Caroline A. Kerr, Philip Hendry
Journal: PLOS ONE
Year: 2012
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9)Title: Resistance and resilience of microbial communities – temporal and spatial insurance against perturbations
Author: Didier L. Baho, Hannes Peter, Lars J. Tranvik
Journal: Environmental Microbiology
Year: 2012
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10)Title: Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau
Author: Jinbo Xiong, Yongqin Liu, Xiangui Lin, Huayong Zhang, Jun Zeng, Juzhi Hou, Yongping ang, Tandong Yao, Rob Knight, Haiyan Chu
Journal: Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

11)Title: Graft-versus-host disease disrupts intestinal microbial ecology by inhibiting Paneth cell production of a-defensins
Author: Yoshihiro Eriguchi, Shuichiro Takashima, Hideyo Oka, Sonoko Shimoji, Kiminori Nakamura, Hidetaka Uryu, Shinji Shimoda, Hiromi Iwasaki, Nobuyuki Shimono, Tokiyoshi Ayabe, Koichi Akashi, Takanori Teshima
Journal: Blood
Year: 2012
View Abstract | Full Paper Request

12)Title: Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
Author: J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, James Huntley, Noah Fierer, Sarah M Owens, Jason Betley, Louise Fraser, Markus Bauer, Niall Gormley, Jack A Gilbert, Geoff Smith and Rob Knight
Journal: The ISME Journal
Year: 2012
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13)Title: Marine sponges and their microbial symbionts: love and other relationships
Author: Nicole S. Webster, Michael W. Taylor
Journal: Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

14)Title: Microbial ecology of deep-sea hydrothermal vents: physiology and cell-to-cell communication in anaerobic chemosynthetic bacteria
Author: Pérez-Rodríguez, Ileana
Journal: Ecology and Evolution
Year: 2012
View Abstract | Full Paper Request

15)Title: Microbial ecology of expanding oxygen minimum zones
Author: Jody J. Wright, Kishori M. Konwar & Steven J. Hallam
Journal: Nature Reviews Microbiology
Year: 2012
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16)Title: A Hydration-Based Biophysical Index for the Onset of Soil Microbial Coexistence
Author: Gang Wang and Dani Or
Journal: Scientific Reports
Year: 2012
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17)Title: A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling
Author: Gangsheng Wang, Wilfred M. Post
Journal: FEMS Microbiology Ecology
Year: 2012
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18)Title: ACE2 links amino acid malnutrition to microbial ecology and intestinal inflammation
Author: Tatsuo Hashimoto, Thomas Perlot, Ateequr Rehman, Jean Trichereau, Hiroaki Ishiguro, Magdalena Paolino, Verena Sigl, Toshikatsu Hanada, Reiko Hanada, Simone Lipinski, Birgit Wild, Simone M. R. Camargo, Dustin Singer, Andreas Richter, Keiji Kuba, Akiyoshi Fukamizu, Stefan Schreiber, Hans Clevers, Francois Verrey, Philip Rosenstiel and Josef M. Penninger
Journal: Nature
Year: 2012
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19)Title: Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88
Author: Erik Larsson, Valentina Tremaroli, Ying Shiuan Lee, Omry Koren, Intawat Nookaew, Ashwana Fricker, Jens Nielsen, Ruth E Ley, Fredrik Bäckhed
Journal: Gut microbiota
Year: 2012
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20)Title: Apple Replant Disease: Role of Microbial Ecology in Cause and Control
Author: Mazzola M, Manici LM
Journal: Annual Review of Phytopathology
Year: 2012
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21)Title: Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes
Author: Jan-Hendrik Hehemann, Amelia G. Kelly, Nicholas A. Pudlo, Eric C. Martens, and Alisdair B. Boraston
Journal: PNAS
Year: 2012
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22)Title: Changes in the microbial communities along the environmental gradient created by a small Fe spring
Author: Helena Guasch, Xavier Garcia Acosta, Gemma Urrea, and Lluis Bañeras
Journal: The Ecology of Springs
Year: 2012
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23)Title: Comparative microbial ecology study of the sediments and the water column of the Río Tinto, an extreme acidic environment
Author: García-Moyano A, González-Toril E, Aguilera A, Amils R
Journal: FEMS Microbiology Ecology
Year: 2012
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24)Title: Cosmopolitanism of microbial eukaryotes in the global deep seas
Author: Creer S, Sinniger F
Journal: Molecular Ecology
Year: 2012
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25)Title: Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption
Author: Valentine DL, Mezic I, Macesic S, Crnjaric-Zic N, Ivic S, Hogan PJ, Fonoberov VA, Loire S
Journal: Proceedings of the National Academy of Sciences of the United States of America
Year: 2012
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26)Title: Ecological effects on gut bacterial communities in wild bumblebee colonies
Author: Hauke Koch, Gabriel Cisarovsky, Paul Schmid-Hempel
Journal: Journal of Animal Ecology
Year: 2012
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27)Title: Ecology and Evolution of Soil Nematode Chemotaxis
Author: Rasmann S, Ali JG, Helder J, van der Putten WH
Journal: Journal of Chemical Ecology
Year: 2012
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28)Title: Ecology and mechanisms of bacterial resistance to antibiotics in peritonitis
Author: Edern A, Fines-Guyon M, Castrale C, Ficheux M, Ryckelynck JP, Lobbedez T
Journal: Nephrologie & Therapeutique
Year: 2012
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29)Title: Ecology and Physics of Bacterial Chemotaxis in the Ocean
Author: Roman Stocker and Justin R. Seymour
Journal: Microbiology and Molecular Biology Reviews
Year: 2012
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30)Title: Ecology of Testate Amoebae in the Komorany Ponds in the Vltava Basin
Author: Burdíková Z, Capek M, Svindrych Z, Gryndler M, Kubínová L, Holcová K
Journal: Microbial Ecology
Year: 2012
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31)Title: Effects of cow's and goat's milk as fermentation media on the microbial ecology of sugary kefir grains
Author: Hsieh HH, Wang SY, Chen TL, Huang YL, Chen MJ
Journal: International Journal of Food Microbiology
Year: 2012
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32)Title: Engineering microbial systems to explore ecological and evolutionary dynamics
Author: Tanouchi Y, Smith RP, You L
Journal: Current Opinion in Biotechnology
Year: 2012
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33)Title: From bacterial to microbial ecosystems (metagenomics)
Author: Williamson SJ, Yooseph S
Journal: Methods in Molecular Biology
Year: 2012
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34)Title: Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau
Author: Jinbo Xiong, Yongqin Liu, Xiangui Lin, Huayong Zhang, Jun Zeng, Juzhi Hou, Yongping ang, Tandong Yao, Rob Knight, Haiyan Chu
Journal: Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

35)Title: Graft-versus-host disease disrupts intestinal microbial ecology by inhibiting Paneth cell production of a-defensins
Author: Yoshihiro Eriguchi, Shuichiro Takashima, Hideyo Oka, Sonoko Shimoji, Kiminori Nakamura, Hidetaka Uryu, Shinji Shimoda, Hiromi Iwasaki, Nobuyuki Shimono, Tokiyoshi Ayabe, Koichi Akashi, Takanori Teshima
Journal: Blood
Year: 2012
View Abstract | Full Paper Request

36)Title: Highly similar microbial communities are shared among related and trophically similar ant species
Author: Anderson KE, Russell JA, Moreau CS, Kautz S, Sullam KE, Hu Y, Basinger U, Mott BM, Buck N, Wheeler DE
Journal: Molecular Ecology
Year: 2012
View Abstract | Full Paper Request

37)Title: Marine fungi: their ecology and molecular diversity
Author: Richards TA, Jones MD, Leonard G, Bass D
Journal: Annual Review of Marine Science
Year: 2012
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38)Title: Marine sponges and their microbial symbionts: love and other relationships
Author: Nicole S. Webster, Michael W. Taylor
Journal: Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

39)Title: Metabolic specialization and the assembly of microbial communities
Author: Johnson DR, Goldschmidt F, Lilja EE, Ackermann M
Journal: The ISME Journal
Year: 2012
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40)Title: Microbial air contamination in indoor environment of a university library
Author: Kalwasinska A, Burkowska A, Wilk I
Journal: Annals of Agricultural and Environmental Medicine:AAEM
Year: 2012
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41)Title: Microbial and Geochemical Assessment of Bauxitic Un-mined and Post-mined Chronosequence Soils from Mocho Mountains, Jamaica
Author: Lewis DE, Chauhan A, White JR, Overholt W, Green SJ, Jasrotia P, Wafula D, Jagoe C
Journal: Microbial Ecology
Year: 2012
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42)Title: Microbial diversity and interactions in subgingival biofilm communities
Author: Diaz PI
Journal: Frontiers of oral biology
Year: 2012
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43)Title: Microbial diversity determines the invasion of soil by a bacterial pathogen
Author: van Elsas JD, Chiurazzi M, Mallon CA, Elhottova D, Kristufek V, Salles JF
Journal: Proceedings of the National Academy of Sciences of the United States of America
Year: 2012
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44)Title: Microbial ecology of deep-sea hydrothermal vents: physiology and cell-to-cell communication in anaerobic chemosynthetic bacteria
Author: Pérez-Rodríguez, Ileana
Journal: Ecology and Evolution
Year: 2012
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45)Title: Microbial ecology of expanding oxygen minimum zones
Author: Jody J. Wright, Kishori M. Konwar & Steven J. Hallam
Journal: Nature Reviews Microbiology
Year: 2012
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46)Title: Microbial Functional Diversity Associated with Plant Litter Decomposition Along a Climatic Gradient
Author: Sherman C, Steinberger Y
Journal: Microbial Ecology
Year: 2012
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47)Title: Microbial transformations of nitrogen, sulfur, and iron dictate vegetation composition in wetlands: a review
Author: Lamers LP, van Diggelen JM, Op den Camp HJ, Visser EJ, Lucassen EC, Vile MA, Jetten MS, Smolders AJ, Roelofs JG
Journal: Frontiers in Microbiology
Year: 2012
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48)Title: Microbiota-Targeted Therapies: An Ecological Perspective
Author: Katherine P. Lemon,Gary C. Armitage, David A. Relman and Michael A. Fischbach
Journal: Science Translational Medicine
Year: 2012
View Abstract | Full Paper Request

49)Title: Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction
Author: Larsen P, Hamada Y, Gilbert J
Journal: Journal of Biotechnology
Year: 2012
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50)Title: Molecular characterization of the microbial communities in the subcaudal gland secretion of the European badger (Meles meles)
Author: Yung Wa Sin, Christina D. Buesching, Terry Burke, David W. Macdonald
Journal: FEMS Microbiology Ecology
Year: 2012
View Abstract | Full Paper Request

51)Title: New directions in coral reef microbial ecology
Author: Garren M, Azam F
Journal: Environmental Microbiology
Year: 2012
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52)Title: Nitrification performance and microbial ecology of nitrifying bacteria in a full-scale membrane bioreactor treating TFT-LCD wastewater
Author: Whang LM, Wu YJ, Lee YC, Chen HW, Fukushima T, Chang MY, Cheng SS, Hsu SF, Chang CH, Shen W, Huang CK, Fu R, Chang B
Journal: Bioresource Technology
Year: 2012
View Abstract | Full Paper Request

53)Title: Progress on FISH probes of sludge bulking caused by filamentous bacteria
Author: WANG Ping; YU Zhisheng; QI Rong; ZHANG Hongxun
Journal: Chinese Journal of Applied & Environmental Biology
Year: 2012
View Abstract | Full Paper Request

54)Title: Reanalysis and Simulation Suggest a Phylogenetic Microarray Does Not Accurately Profile Microbial Communities
Author: David J. Midgley, Paul Greenfield, Janet M. Shaw, Yalchin Oytam Dongmei Li, Caroline A. Kerr, Philip Hendry
Journal: PLOS ONE
Year: 2012
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55)Title: Resistance and resilience of microbial communities – temporal and spatial insurance against perturbations
Author: Didier L. Baho, Hannes Peter, Lars J. Tranvik
Journal: Environmental Microbiology
Year: 2012
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56)Title: Spatial and temporal variability of the human microbiota
Author: L. W. Parfrey ,R. Knight
Journal: Clinical Microbiology and Infection
Year: 2012
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57)Title: Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils
Author: Paul L.E. Bodelier, Marie-Jose Bär-Gilissen, Marion Meima-Franke, Kees Hordijk
Journal: Ecology and Evolution
Year: 2012
View Abstract | Full Paper Request

58)Title: Targeted Antimicrobial Treatment to Re-establish a Healthy Microbial Flora for Long-term Protection
Author: R. Eckert, R. Sullivan, W. Shi1
Journal: Advances in Dental Research
Year: 2012
View Abstract | Full Paper Request

59)Title: Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities
Author: Hikaru Suenaga
Journal: Environmental microbiology
Year: 2012
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60)Title: The Chemical Ecology of Soil Organic Matter Molecular Constituents
Author: Simpson MJ, Simpson AJ
Journal: Journal of Chemical Ecology
Year: 2012
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61)Title: The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities
Author: Lee CK, Barbier BA, Bottos EM, McDonald IR, Cary SC
Journal: The ISME Journal
Year: 2012
View Abstract | Full Paper Request

62)Title: The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters
Author: McDonald JE, Houghton JN, Rooks DJ, Allison HE, McCarthy AJ
Journal: Environmental Microbiology
Year: 2012
View Abstract | Full Paper Request

63)Title: The microbial ecology of wine grape berries
Author: Barata A, Malfeito-Ferreira M, Loureiro V
Journal: International Journal of Food Microbiology
Year: 2012
View Abstract | Full Paper Request

64)Title: The potential of beneficial microorganisms in agricultural systems
Author: M. Andrews, M.G. Cripps & G.R. Edwards
Journal: Annals of Applied Biology
Year: 2012
View Abstract | Full Paper Request

65)Title: Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
Author: J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, James Huntley, Noah Fierer, Sarah M Owens, Jason Betley, Louise Fraser, Markus Bauer, Niall Gormley, Jack A Gilbert, Geoff Smith and Rob Knight
Journal: The ISME Journal
Year: 2012
View Abstract | Full Paper Request

_____________________________________________________________________________________________________________

1)Title: A novel fingerprint method to assess the diversity of methanogens in microbial systems
Author: Gagnon N, Barret M, Topp E, Kalmokoff M, Massé D, Masse L, Talbot G
Journal: FEMS Microbiology Letters
Year: 2011
View Abstract | Full Paper Request

2)Title: Anaerobic digestion and co-digestion processes of vegetable and fruit residues: process and microbial ecology
Author: Garcia-Peña EI, Parameswaran P, Kang DW, Canul-Chan M, Krajmalnik-Brown R
Journal: Bioresource Technology
Year: 2011
View Abstract | Full Paper Request

3)Title: Bacteriophage ecology in environmental biotechnology processes
Author: Shapiro OH, Kushmaro A
Journal: Current Opinion in Biotechnology
Year: 2011
View Abstract | Full Paper Request

4)Title: Can metal nanoparticles be a threat to microbial decomposers of plant litter in streams?
Author: Pradhan A, Seena S, Pascoal C, Cássio F
Journal: Microbial Ecology
Year: 2011
View Abstract | Full Paper Request

5)Title: Ecosystems biology of microbial metabolism
Author: Klitgord N, Segrè D
Journal: Current Opinion in Biotechnology
Year: 2011
View Abstract | Full Paper Request

6)Title: Effects of pH and ORP on microbial ecology and kinetics for hydrogen production in continuously dark fermentation
Author: Song J, An D, Ren N, Zhang Y, Chen Y
Journal: Bioresource Technology
Year: 2011
View Abstract | Full Paper Request

7)Title: Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula
Author: Jones AC, Monroe EA, Podell S, Hess WR, Klages S, Esquenazi E, Niessen S, Hoover H, Rothmann M, Lasken RS, Yates JR 3rd, Reinhardt R, Kube M, Burkart MD, Allen EE, Dorrestein PC, Gerwick WH, Gerwick L
Journal: Proceedings of the National Academy of Sciences of the United States of America
Year: 2011
View Abstract | Full Paper Request

8)Title: Geobacter: the microbe electric's physiology, ecology, and practical applications
Author: Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru AE, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP
Journal: Advances in Microbial Physiology
Year: 2011
View Abstract | Full Paper Request

9)Title: Human microbial ecology: lactobacilli, probiotics, selective decontamination
Author: Mikelsaar M
Journal: Anaerobe
Year: 2011
View Abstract | Full Paper Request

10)Title: Integrating microbial ecology in bioprocess understanding: the case of gas biofiltration
Author: Cabrol L, Malhautier L
Journal: Applied Microbiology and Biotechnology
Year: 2011
View Abstract | Full Paper Request

11)Title: Microbial ecology and quality assurance in food fermentation systems. The case of kefir grains application
Author: Plessas S, Alexopoulos A, Voidarou C, Stavropoulou E, Bezirtzoglou E
Journal: Anaerobe
Year: 2011
View Abstract | Full Paper Request

12)Title: Microbial ecology of autothermal thermophilic aerobic digester (ATAD) systems for treating waste activated sludge
Author: Hayes D, Izzard L, Seviour R
Journal: Systematic and Applied Microbiology
Year: 2011
View Abstract | Full Paper Request

13)Title: Microbial ecology of fish species ongrowing in Greek sea farms and their watery environment
Author: Alexopoulos A, Plessas S, Voidarou C, Noussias H, Stavropoulou E, Mantzourani I, Tzora A, Skoufos I, Bezirtzoglou E
Journal: Anaerobe
Year: 2011
View Abstract | Full Paper Request

14)Title: Microbial ecology of the dark ocean above, at, and below the seafloor
Author: Orcutt BN, Sylvan JB, Knab NJ, Edwards KJ
Journal: Microbiology and Molecular Biology Reviews : MMBR
Year: 2011
View Abstract | Full Paper Request

15)Title: Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis
Author: Nagalingam NA, Kao JY, Young VB
Journal: Inflammatory bowel disease
Year: 2011
View Abstract | Full Paper Request

16)Title: Microbial ecology of the watery ecosystems of Evros river in North Eastern Greece and its influence upon the cultivated soil ecosystem
Author: Vavias S, Alexopoulos A, Plessas S, Stefanis C, Voidarou C, Stavropoulou E, Bezirtzoglou E
Journal: Anaerobe
Year: 2011
View Abstract | Full Paper Request

17)Title: Microbial ecology studies of spontaneous fermentation: starter culture selection for prickly pear wine production
Author: Rodríguez-Lerma GK, Gutiérrez-Moreno K, Cárdenas-Manríquez M, Botello-Álvarez E, Jiménez-Islas H, Rico-Martínez R, Navarrete-Bolaños JL
Journal: Journal of Food Science
Year: 2011
View Abstract | Full Paper Request

18)Title: Molecular musings in microbial ecology and evolution
Author: Case RJ, Boucher Y
Journal: Biology Direct
Year: 2011
View Abstract | Full Paper Request

19)Title: Predicting microbial nitrogen pathways from basic principles
Author: van de Leemput IA, Veraart AJ, Dakos V, de Klein JJ, Strous M, Scheffer M
Journal: Environmental Microbiology
Year: 2011
View Abstract | Full Paper Request

20)Title: spyder, a new method for in silico design and assessment of 16S rRNA gene primers for molecular microbial ecology
Author: Thomas MC, Thomas DK, Selinger LB, Inglis GD
Journal: FEMS Microbiology Letters
Year: 2011
View Abstract | Full Paper Request

21)Title: Study of the microbial ecology of wild and aquacultured Tunisian fresh fish
Author: Boulares M, Mejri L, Hassouna M
Journal: Journal of Food Protection
Year: 2011
View Abstract | Full Paper Request

22)Title: The impact of microbial metabolism on marine dissolved organic matter
Author: Kujawinski EB
Journal: Annual Review of Marine Science
Year: 2011
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23)Title: The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist
Author: Gilbert JA, O'Dor R, King N, Vogel TM
Journal: Microbial Informatics and Experimentation
Year: 2011
View Abstract | Full Paper Request

____________________________________________________________________________________________________________

 

1)Title: Abundance of Novel and Diverse tfdA-Like Genes, Encoding Putative Phenoxyalkanoic Acid Herbicide-Degrading Dioxygenases, in Soil
Author: Adrienne Zaprasis, Ya-Jun Liu, Shuang-Jiang Liu, Harold L. Drake, Marcus A. Horn
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (1,327 KB)

2)Title: Characterization of Extracellular Polymeric Substances from Acidophilic Microbial Biofilms
Author: Yongqin Jiao, George D. Cody, Anna K. Harding, Paul Wilmes, Matthew Schrenk, Korin E. Wheeler, Jillian F. Banfield, Michael P. Thelen
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (361 KB)

3)Title: Desulfovibrio magneticus RS-1 contains an iron- and phosphorus-rich organelle distinct from its bulletshaped magnetosomes
Author: Meghan E. Byrne, David A. Ball, Jean-Luc Guerquin-Kern, Isabelle Rouiller, Ting-Di Wu, Kenneth H. Downing, Hojatollah Vali, Arash Komeili
Journal: PNAS
Year: 2010
View Abstract | Full Paper  (1,491 KB)

4)Title: Integrating multiple ‘omics’ analysis for microbial biology: application and methodologies
Author: Weiwen Zhang, Feng Li Lei Nie
Journal: Microbiology
Year: 2010
View Abstract | Full Paper  (223 KB)

5)Title: Archaeal and Bacterial Communities Respond Differently to Environmental Gradients in Anoxic Sediments of a California Hypersaline Lake, the Salton Sea
Author: Brandon K. Swan, Christopher J. Ehrhardt, Kristen M. Reifel, Lilliana I. Moreno, David L. Valentine
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (3,131 KB)

6)Title: Archaeal Diversity and Distribution along Thermal and Geochemical Gradients in Hydrothermal Sediments at the Yonaguni Knoll IV Hydrothermal Field in the Southern Okinawa Trough
Author: Takuro Nunoura, Hanako Oida, Miwako Nakaseama, Ayako Kosaka, Satoru B. Ohkubo,Toru Kikuchi, Hiromi Kazama, Shoko Hosoi-Tanabe, Ko-ichi Nakamura, Masataka Kinoshita, Hisako Hirayama, Fumio Inagaki, Urumu Tsunogai, Jun-ichiro Ishibashi, Ken Takai
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (2,011 KB)

7)Title: Benthic Bacterial Diversity in Submerged Sinkhole Ecosystems
Author: Stephen C. Nold, Joseph B. Pangborn, Heidi A. Zajack, Scott T. Kendall,Richard R. Rediske, Bopaiah A. Biddanda
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (850 KB)

8)Title: Biogeography and Biodiversity in Sulfide Structures of Active and Inactive Vents at Deep-Sea Hydrothermal Fields of the Southern Mariana Trough
Author: Shingo Kato, Yoshinori Takano, Takeshi Kakegawa, Hironori Oba, Kazuhiko Inoue, Chiyori Kobayashi, Motoo Utsumi, Katsumi Marumo, Kensei Kobayashi, Yuki Ito, Jun-ichiro Ishibashi, Akihiko Yamagishi
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (603 KB)

9)Title: Distribution and Diversity of Escherichia coli Populations in the South Nation River Drainage Basin, Eastern Ontario, Canada
Author: Emilie Lyautey, Zexun Lu, David R. Lapen, Graham Wilkes, Andrew Scott, Tanya Berkers,Thomas A. Edge, Edward Topp
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (499 KB)

10)Title: Assessing Niche Separation among Coexisting Limnohabitans Strains through Interactions with a Competitor, Viruses, and a Bacterivore
Author: Karel Simek, Vojtech Kasalicky´, Karel Hornak, Martin W. Hahn, Markus G. Weinbauer
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (1,230 KB)

11)Title: Ecological Genetic Divergence of the Fungal Pathogen Didymella rabiei on Sympatric Wild and Domesticated Cicer spp. (Chickpea)
Author: Omer Frenkel, Tobin L. Peever, Martin I. Chilvers, Hilal Ozkilinc, Canan Can, Shahal Abbo, Dani Shtienberg, Amir Sherman
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2010
View Abstract | Full Paper  (1,294 KB)

12)Title: Ecosystem-specific selection pressures revealed through comparative population genomics
Author: Coleman ML, Chisholm SW
Journal: Proc Natl Acad Sci U S A
Year: 2010
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13)Title: Environmental Factors Shape Sediment Anammox Bacterial Communities in Hypernutrified Jiaozhou Bay, China
Author: Hongyue Dang, Ruipeng Chen, Lin Wang, Lizhong Guo, Pingping Chen, Zuwang Tang, Fang Tian, Shaozheng Li, Martin G. Klotz
Journal: Applied and Environmental Microbiology
Year: 2010
View Abstract | Full Paper Request

14)Title: Presence of Pathogens and Indicator Microbes at a Non-Point Source Subtropical Recreational Marine Beach
Author: Amir M. Abdelzaher, Mary E. Wright, Cristina Ortega, Helena M. Solo-Gabriele, Gary Miller, Samir Elmir, Xihui Newman, Peter Shih, J. Alfredo Bonilla, Tonya D. Bonilla, Carol J. Palmer, Troy Scott, Jerzy Lukasik, Valerie J. Harwood, Shannon McQuaig, Chris Sinigalliano, Maribeth Gidley, Lisa R. W. Plano, Xiaofang Zhu, John D. Wang, Lora E. Fleming
Journal: Applied and Environmental Microbiology
Year: 2010
View Abstract | Full Paper  (314 KB)

15)Title: PssA is required for a-amylase secretion in Antarctic Pseudoalteromonas haloplanktis
Author: Ermenegilda Parrilli, Maria Giuliani, Cinzia Pezzella, Antoine Danchin, Gennaro Marino, Maria Luisa Tutino
Journal: Microbiology
Year: 2010
View Abstract | Full Paper Request

16)Title: Randomly Amplified Polymorphic DNA Reveals Tight Links between Viruses and Microbes in the Bathypelagic Zone of the Northwestern Mediterranean Sea
Author: Christian Winter, Markus G. Weinbauer
Journal: Applied and Environmental Microbiology
Year: 2010
View Abstract | Full Paper Request

 

___________________________________________________________________________________________________________

 

1)Title: Aldouronate Utilization in Paenibacillus sp. Strain JDR-2: Physiological and Enzymatic Evidence for Coupling of Extracellular Depolymerization and Intracellular Metabolism
Author: Guang Nong, John D. Rice, Virginia Chow, James F. Preston
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,306 KB)

2)Title: An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota1[C][W][OA]
Author: Dayakar V. Badri, NairaQuintana, Elie G. El Kassis, Hye Kyong Kim, Young Hae Choi, Akifumi Sugiyama, Robert Verpoorte, Enrico Martinoia, Daniel K. Manter, Jorge M. Vivanco
Journal: Plant Physiology
Year: 2009
View Abstract | Full Paper  (694 KB)

3)Title: Assessment of the Diversity, Abundance, and Ecological Distribution of Members of Candidate Division SR1 Reveals a High Level of Phylogenetic Diversity but Limited Morphotypic Diversity
Author: James P. Davis, Noha H. Youssef, Mostafa S. Elshahed
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,725 KB)

4)Title: Biodiversity of cyanobacteria and green algae on monuments in the Mediterranean Basin: an overview
Author: Maria Filomena Macedo, Ana Ze´ lia Miller, Ame´ lia Dioni´sio, Cesareo Saiz-Jimenez
Journal: Microbiology
Year: 2009
View Abstract | Full Paper  (647 KB)

5)Title: CO Dehydrogenase Genes Found in Metagenomic Fosmid Clones from the Deep Mediterranean Sea
Author: Ana-Belen Martin-Cuadrado, Rohit Ghai, Aitor Gonzaga, Francisco Rodriguez-Valera
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,234 KB)

6)Title: Comparative Genome-Wide Transcriptional Profiling of Azorhizobium caulinodans ORS571 Grown under Free-Living and Symbiotic Conditions
Author: Shuhei Tsukada, Toshihiro Aono, Noriko Akiba, Kyung-Bum Lee, Chi-Te Liu, Hiroki Toyazaki, Hiroshi Oyaizu
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (601 KB)

7)Title: Comparison of Effects of Compost Amendment and of Single-Strain Inoculation on Root Bacterial Communities of Young Cucumber Seedlings
Author: Maya Ofek, Yitzhak Hadar, Dror Minz
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (706 KB)

8)Title: Comprehensive Census of Bacteria in Clean Rooms by Using DNA Microarray and Cloning Methods
Author: Myron T. La Duc, Shariff Osman, Parag Vaishampayan, Yvette Piceno, Gary Andersen, J. A. Spry, Kasthuri Venkateswaran
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (3,491 KB)

9)Title: Diversity and Distribution of Anaeromyxobacter Strains in a Uranium-Contaminated Subsurface Environment with a Nonuniform Groundwater Flow
Author: Sara H. Thomas, Elizabeth Padilla-Crespo, Phillip M. Jardine, Robert A. Sanford, Frank E. Loffler
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,094 KB)

10)Title: Diversity and Stratification of Archaea in a Hypersaline Microbial Mat
Author: Charles E. Robertson, John R. Spear, J. Kirk Harris, Norman R. Pace
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,382 KB)

11)Title: Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation
Author: Dwayne A. Elias, Aindrila Mukhopadhyay, Marcin P. Joachimiak, Elliott C. Drury, Alyssa M. Redding, Huei-Che B. Yen, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, Jay D. Keasling, Judy D. Wall
Journal: Nucleic Acids Research
Year: 2009
View Abstract | Full Paper  (1,324 KB)

12)Title: Identification of an aox System That Requires Cytochrome c in the Highly Arsenic-Resistant Bacterium Ochrobactrum tritici SCII24
Author: Rita Branco, Romeu Francisco, Ana Paula Chung, Paula Vasconcelos Morais
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,667 KB)

13)Title: Influence of Vegetation on the In Situ Bacterial Community and Polycyclic Aromatic Hydrocarbon (PAH) Degraders in Aged PAH-Contaminated or Thermal-Desorption-Treated Soil
Author: Aure´lie Ce´bron, Thierry Beguiristain, Pierre Faure, Marie-Paule Norini, Jean-Franc¸ois Masfaraud, Corinne Leyval
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,781 KB)

14)Title: Variations in Archaeal and Bacterial Diversity Associated with the Sulfate-Methane Transition Zone in Continental Margin Sediments (Santa Barbara Basin, California)
Author: Benjamin K. Harrison, Husen Zhang, Will Berelson, Victoria J. Orphan
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (3,164 KB)

15)Title: Assessment of the Diversity, Abundance, and Ecological Distribution of Members of Candidate Division SR1 Reveals a High Level of Phylogenetic Diversity but Limited Morphotypic Diversity
Author: James P. Davis, Noha H. Youssef, Mostafa S. Elshahed
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,725 KB)

16)Title: Diversity and Stratification of Archaea in a Hypersaline Microbial Mat
Author: Charles E. Robertson, John R. Spear, J. Kirk Harris, Norman R. Pace
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,382 KB)

17)Title: Diversity of Bacteria in the Marine Sponge Aplysina fulva in Brazilian Coastal Waters
Author: C. C. P. Hardoim, R. Costa, F. V. Arau´jo, E. Hajdu, R. Peixoto, U. Lins, A. S. Rosado, J. D. van Elsas
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (2,769 KB)

18)Title: Identifying the Source of Unknown Microcystin Genes and Predicting Microcystin Variants by Comparing Genes within Uncultured Cyanobacterial Cells
Author: Christopher J. Allender, Gary R. LeCleir, Johanna M. Rinta-Kanto, Randall L. Small, Michael F. Satchwell, Gregory L. Boyer, Steven W. Wilhelm
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (392 KB)

19)Title: Molecular Comparison of Bacterial Communities within Iron-Containing Flocculent Mats Associated with Submarine Volcanoes along the Kermadec Arc
Author: Tyler W. Hodges, Julie B. Olson
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (1,306 KB)

20)Title: Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice Metagenome
Author: Carola Simon, Arnim Wiezer, Axel W. Strittmatter, Rolf Daniel
Journal: APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Year: 2009
View Abstract | Full Paper  (528 KB)

 

 

 

 

 

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