Subscribe here to get periodical Newsletter issues on Microorganisms and Environment Management at free of cost.
  • DNA Barcoding

    1)Title: 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial

    methodological biases
    Author: Leho Tedersoo, R. Henrik Nilsson, Kessy Abarenkov, Teele Jairus, Ave Sadam, Irja Saar, Mohammad Bahram,

    Eneke Bechem, George Chuyong, Urmas Kõljalg
    Journal: New Phytologist
    Year: 2010
    View Abstract | Full Paper Request

    2)Title: A constructive step towards selecting a DNA barcode for fungi
    Author: Ursula Eberhardt
    Journal: New Phytologist
    Year: 2010
    View Abstract | Full Paper Request

     

    3)Title: An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database)
    Author: Shao-Ke Lou, Ka-Lok Wong, Ming Li, Paul Pui-Hay But, Stephen Kwok-Wing Tsui and Pang-Chui Shaw
    Journal: BMC Genomics
    Year: 2010
    View Abstract | Full Paper Request

    4)Title: Analysis of Oral Microbiota in Children with Dental Caries by PCR-DGGE and Barcoded Pyrosequencing
    Author: Zongxin Ling, Jianming Kong, Peng Jia, Chaochun Wei, Yuezhu Wang, Zhiwen Pan, Wujing Huang, Lanjuan Li, Hui Chen and Charlie Xiang.
    Journal: Microbial Ecology
    Year: 2010
    View Abstract | Full Paper Request

    5)Title: Current state and perspectives of fungal DNA barcoding and rapid identification procedures
    Author: Dominik Begerow, Henrik Nilsson, Martin Unterseher and Wolfgang Maier
    Journal: Applied Microbiology and Biotechnology
    Year: 2010
    View Abstract | Full Paper Request

    6)Title: DNA barcoding of arbuscular mycorrhizal fungi
    Author: Herbert Stockinger, Manuela Krüger, Arthur Schüßler
    Journal: New Phytologist
    Year: 2010
    View Abstract | Full Paper Request

    7)Title: DNA barcoding of fungi: a case study using ITS sequences for identifying aquatic hyphomycete species
    Author: Sahadevan Seena, Cláudia Pascoal, Ludmila Marvanová and Fernanda Cássio
    Journal: Fungal Diversity
    Year: 2010
    View Abstract | Full Paper Request

     

    8)Title: DNA Barcodes for Marine Biodiversity: Moving Fast Forward?
    Author: Adriana E. Radulovici, Philippe Archambault and France Dufresne
    Journal: Diversity
    Year: 2010
    View Abstract | Full Paper Request

     

    9)Title: DNA barcoding and traditional taxonomy unified through Integrative Taxonomy: a view that challenges the

    debate questioning both methodologies
    Author: Amanda Ciprandi Pires and Luciane Marinoni
    Journal: Biota Neotrop
    Year: 2010
    View Abstract | Full Paper Request

     

    10)Title: DNA barcoding: theoretical aspects and practical applications
    Author: Maurizio Casiraghi, Massimo Labra, Emanuele Ferri, Andrea Galimberti, Fabrizio De Mattia
    Journal: systematic biology
    Year: 2010
    View Abstract | Full Paper Request

     

    11)Title: DNA Barcoding, Fungal Diversity and Authentication of Wild Gourmet Mushrooms
    Author: XU Jianping
    Journal: Acta Agriculturae Universitatis Jiangxiensis
    Year: 2010
    View Abstract | Full Paper Request

    12)Title: ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
    Author: Eva Bellemain, Tor Carlsen, Christian Brochmann, Eric Coissac, Pierre Taberlet and Havard Kauserud.
    Journal: BMC Microbiology
    Year: 2010
    View Abstract | Full Paper Request

     

    13)Title: Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description
    Author: Paul Z. Goldstein and Rob DeSalle
    Journal: Bioessays
    Year: 2010
    View Abstract | Full Paper Request

    14)Title: Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle
    Author: AMANDA D. ROE, ADRIANNE V. RICE, SEAN E. BROMILOW, JANICE E. K. COOKE, FELIX A. H. SPERLING
    Journal: Molecular Ecology Resources
    Year: 2010
    View Abstract | Full Paper Request

     

    15)Title: Rapid and reliable high-throughput methods of DNA extraction for use in barcoding and molecular systematics of mushrooms
    Author: BRYN T. M. DENTINGER, SIMONA MARGARITESCU and JEAN-MARC MONCALVO
    Journal: Molecular Ecology Resources
    Year: 2010
    View Abstract | Full Paper Request

     

    16)Title: The Promise and Pitfalls of Sequence-Based Identification of Plant-Pathogenic Fungi and Oomycetes
    Author: Seogchan Kang, Michele A. Mansfield, Bongsoo Park, David M. Geiser, Kelly L. Ivors, Michael D. Coffey, Niklaus J. Grünwald,

    Frank N. Martin, C. André Lévesque, and Jaime E. Blair
    Journal: Phytopathology
    Year: 2010
    View Abstract | Full Paper Request

    _____________________________________________________________________________________________________________

    1)Title: Assignment of Reference 5’-end 16S rDNA Sequences and Species-Specific Sequence Polymorphisms Improves Species

    Identification of Nocardia
    Author: Fanrong Kong, Sharon C.A Chen, Xiaoyou Chen, Vitali Sintchenko, Catriona Halliday, Lin Cai, Zhongsheng Tong,

    Ok Cha Lee, and Tania C Sorrell
    Journal: The Open Microbiology Journal
    Year: 2009
    View Abstract | Full Paper Request

    2)Title: 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    Author: M. Buee, M. Reich, C. Murat, E. Morin, R. H. Nilsson, S. Uroz and F. Martin
    Journal: New Phytologist
    Year: 2009
    View Abstract | Full Paper Request

    3)Title: A polyphasic approach for studying Colletotrichum
    Author: Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J.M., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu,

    Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. and Johnston, P.R.
    Journal: Fungal Diversity
    Year: 2009
    View Abstract | Full Paper Request

    4)Title: Application of DNA Barcoding in Fungal Research
    Author: Wang Wenjing,Wang Xiaoliang,Wang Xincun,Yu Xiaodan,Li Yi,Wei Tiezheng,Yao Yijian
    Journal: Frontier Science
    Year: 2009
    View Abstract | Full Paper Request

    5)Title: Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes
    Author: MARK E. SIDDALL, FRANK M. FONTANELLA, SARA C. WATSON, SEBASTIAN KVIST, AND CHRISTER ERSEUS
    Journal: SYSTEMATIC BIOLOGY
    Year: 2009
    View Abstract | Full Paper Request

    6)Title: Barcoding of Plants and Fungi
    Author: Mark W. Chase and Michael F. Fay
    Journal: ECOLOGY
    Year: 2009
    View Abstract | Full Paper Request

    7)Title: DNA-based species level detection of Glomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi
    Author: Manuela Krüger, Herbert Stockinger, Claudia Krüger, Arthur Schüßler
    Journal: New Phytologist
    Year: 2009
    View Abstract | Full Paper Request

    8)Title: Evaluation of mitochondrial genes as DNA barcode for Basidiomycota
    Author: AGATHE VIALLE, NICOLAS FEAU, MATHIEU ALLAIRE, MARYNA DIDUKH, FRANCIS MARTIN, JEAN-MARC MONCALVO,

    RICHARD C. HAMELIN
    Journal: Molecular Ecology Resources
    Year: 2009
    View Abstract | Full Paper Request

    9)Title: How to know unknown fungi: the role of a herbarium
    Author: Patrick M. Brock, Heidi Döring, Martin I. Bidartondo
    Journal: New Phytologist
    Year: 2009
    View Abstract | Full Paper Request

    10)Title: Progress towards DNA barcoding of fungi
    Author: KEITH A. SEIFERT
    Journal: Molecular Ecology Resources
    Year: 2009
    View Abstract | Full Paper Request

    11)Title: Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
    Author: Monica Santamaria, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio and Cecilia Saccone
    Journal: BMC Bioinformatics
    Year: 2009
    View Abstract | Full Paper Request

    ___________________________________________________________________________________________________________

    1)Title: A universal DNA mini-barcode for biodiversity analysis
    Author: Isabelle Meusnier, Gregory AC Singer, Jean-François Landry, Donal A Hickey, Paul DN Hebert and Mehrdad Hajibabaei
    Journal: BMC Genomics
    Year: 2008
    View Abstract | Full Paper Request

    2)Title: Comparative Analysis of Human Gut Micro biota by Barcoded Pyrosequencing
    Author: Anders F. Andersson, Mathilda Lindberg, Hedvig Jakobsson, Fredrik Bäckhed, Pal Nyren, Lars Engstrand
    Journal: PLOS ONE
    Year: 2008
    View Abstract | Full Paper Request

    3)Title: Four years of DNA barcoding: Current advances and prospects
    Author: Lise Frézal, Raphael Leblois
    Journal: Infection, Genetics and Evolution
    Year: 2008
    View Abstract | Full Paper Request

    4)Title: Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its

    Implications for Molecular Species Identification
    Author: R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Nils Hallenberg, and Karl-Henrik Larsson
    Journal: Evolutionary Bioinformatics
    Year: 2008
    View Abstract | Full Paper Request

    5)Title: Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding

    and taxon-specific primers
    Author: Leho Tedersoo, Teele Jairus, Bryony M. Horton, Kessy Abarenkov, Triin Suvi, Irja Saar, Urmas Kõljalg
    Journal: New Phytologist
    Year: 2008
    View Abstract | Full Paper Request

    ______________________________________________________________________________________________________________

    1)Title: Assessing the effect of varying sequence length on DNA barcoding of fungi
    Author: XIANG JIA MIN, DONAL A. HICKEY
    Journal: Molecular Ecology Notes
    Year: 2007
    View Abstract | Full Paper Request

    2)Title: DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
    Author: Mehrdad Hajibabaei, Gregory A.C. Singer, Paul D.N. Hebert, Donal A. Hickey
    Journal: Trends in Genetics
    Year: 2007
    View Abstract | Full Paper Request

    3)Title: Impact of DNA sequence-data on the taxonomy of anamorphic fungi
    Author: Belle Damodara Shenoy, Rajesh Jeewon and Kevin D. Hyde
    Journal: Fungal Diversity
    Year: 2007
    View Abstract | Full Paper Request

    4)Title: Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case
    Author: Keith A. Seifert , Robert A. Samson, Jeremy R. deWaard, Jos Houbraken, C. André Lévesque, Jean-Marc Moncalvo,

    Gerry Louis-Seize, and Paul D. N. Hebert
    Journal: PNAS
    Year: 2007
    View Abstract | Full Paper Request

    5)Title: The current status of species recognition and identification in Aspergillus
    Author: D.M. Geiser, M.A. Klich, J.C. Frisvad, S.W. Peterson, J. Varga and R.A. Samson
    Journal: Studies in Mycology
    Year: 2007
    View Abstract | Full Paper Request

    __________________________________________________________________________________________________________

    1)Title: Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective
    Author: R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov, Karl-Henrik Larsson, Urmas Kõljalg
    Journal: PLoS ONE
    Year: 2006
    View Abstract | Full Paper Request

    _________________________________________________________________________________________________________

    1)Title: DNA-BAR: distinguisher selection for DNA barcoding
    Author: B. DasGupta, K. M. Konwar, I. I. Mandoiu and A. A. Shvartsman
    Journal: Genome analysis
    Year: 2005
    View Abstract | Full Paper Request

    2)Title: Microcoding: the second step in DNA barcoding
    Author: R. C. Summerbell, C. A. Levesque, K. A. Seifert, M. Bovers, J. W. Fell, M. R. Diaz, T. Boekhout, G. S. de Hoog,

    J. Stalpers and P. W. Crous
    Journal: Phil. Trans. R. Soc. B
    Year: 2005
    View Abstract | Full Paper Request

    3)Title: UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi
    Author: Urmas Kõljalg, Karl-Henrik Larsson, Kessy Abarenkov, R. Henrik Nilsson, Ian J. Alexander, Ursula Eberhardt,

    Susanne Erland, Klaus Høiland, Rasmus Kjøller Ellen Larsson, Taina Pennanen, Robin Sen, Andy F. S. Taylor, Leho Tedersoo,

    Trude Vrålstad, Björn M. Ursing.
    Journal: New Phytologist
    Year: 2005
    View Abstract | Full Paper Request

    __________________________________________________________________________________________________________

    1)Title: Differentiation of Micromonospora Isolates from a Coastal Sediment in Wales on the Basis of Fourier Transform

    Infrared Spectroscopy, 16S rRNA Sequence Analysis, and the Amplified Fragment Length Polymorphism Technique
    Author: Hongjuan Zhao ,Yankuba Kassama, Michael Young, Douglas B. Kell and Royston Goodacre
    Journal: Applied and Environmental Microbiology
    Year: 2004
    View Abstract | Full Paper Request

    2)Title: Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification
    Author: Kipling W. Will, Daniel Rubinoff
    Journal: Cladistics
    Year: 2004
    View Abstract | Full Paper Request

    << Previous>>

    The other Abstracts are available in CDs and will be sent on request (mail id: dzum@envis.nic.in, enviscoordinator@gmail.com)

     
     
    Copyright © 2005 ENVIS Centre ! All rights reserved This site is optimized for 1024 x 768 screen resolution Query Form | Feedback | Privacy